DaliLite: Structural Neighbours

Query: 1NKQA MOLECULE: HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1NKQ-A 47.3  0.0  247   247  100   HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1                 "         
   2:  2DFU-A 25.7  2.0  200   251   33   PROBABLE 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE               "         
   3:  1NR9-A 25.5  1.8  197   211   36   PROTEIN YCGM;                                              "         
   4:  1GTT-A 22.2  2.8  192   421   27   4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL            "         
   5:  1QCO-A 18.8  2.5  205   416   20   FUMARYLACETOACETATE HYDROLASE;                             "         
   6:  2EB4-A 15.3  3.1  188   261   18   2-OXO-HEPT-3-ENE-1,7-DIOATE HYDRATASE;                     "         
   7:  1SV6-A 15.2  2.8  185   261   18   2-KETO-4-PENTENOATE HYDRATASE;                             "         
   8:  1HNF-A  3.1  2.9   76   179    8   CD2;                                                       "         
   9:  1I85-A  3.0  3.1   79   110   13   T LYMPHOCYTE ACTIVATION ANTIGEN CD86;                      "         
  10:  2PN5-A  2.9  4.7   82  1283    6   THIOESTER-CONTAINING PROTEIN I;                            "         
  11:  1I8L-A  2.9  3.3   78   199    5   T LYMPHOCYTE ACTIVATION ANTIGEN CD80;                      "         
  12:  2J12-B  2.5  2.8   74   120    5   FIBER PROTEIN;                                             "         
  13:  2HUH-A  2.5  4.0   88   147    7   PUTATIVE DNA MISMATCH REPAIR PROTEIN;                      "         
  14:  2DRU-A  2.5  3.0   73   180    8   CHIMERA OF CD48 ANTIGEN AND T-CELL SURFACE                 "         
  15:  2IF7-A  2.4  4.9   78   188    1   SLAM FAMILY MEMBER 6;                                      "         
  16:  2GJ7-E  2.3  3.4   78   171    9   IG GAMMA-1 CHAIN C REGION;                                 "         
  17:  2FRG-P  2.3  3.5   74   106    7   TREM-LIKE TRANSCRIPT-1;                                    "         
  18:  1JMA-A  2.3  4.3   98   259    7   HERPESVIRUS ENTRY MEDIATOR;                                "         
  19:  1CN4-A  2.3  3.6   87   217    3   PROTEIN (ERYTHROPOIETIN RECEPTOR);                         "         
  20:  1F97-A  2.2  3.2   71   207   10   JUNCTION ADHESION MOLECULE;                                "         
-

No 1: 1NKQA  MOLECULE: HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1                 

DSSP  LLHHHHHLLLEEEELLLLLLLHHHHHLLLLEEEELHHHEELLLLLLLLLLLLLLLLLLLL
Query SYNYLKAARKIICIGRNYAAHIKELNNQPFFFLKPTSSIVTPLSSSPANSTFNGLNEDGT   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct SYNYLKAARKIICIGRNYAAHIKELNNQPFFFLKPTSSIVTPLSSSPANSTFNGLNEDGT   60
DSSP  LLHHHHHLLLEEEELLLLLLLHHHHHLLLLEEEELHHHEELLLLLLLLLLLLLLLLLLLL


DSSP  LLLLEEELLLLLEEELEEEEEEELLLLLLLLLLLHHHLHHHEEEEEEEELLEEHHHHHHH
Query NPGPIFIPRGVKVHHEIELALIVSKHLSNVTKXKPEEVYDSISGVALALDLTARNVQDEA  120
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct NPGPIFIPRGVKVHHEIELALIVSKHLSNVTKXKPEEVYDSISGVALALDLTARNVQDEA  120
DSSP  LLLLEEELLLLLEEELEEEEEEELLLLLLLLLLLHHHLHHHEEEEEEEELLEEHHHHHHH


DSSP  HHHLLLLHHHHHLLLLEELLLLEEHHHHHHHLLLLLLLEEEEEEELLEEEEEEEHHHLLL
Query KKKGLPWTISKGFDTFXPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLXLH  180
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct KKKGLPWTISKGFDTFXPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLXLH  180
DSSP  HHHLLLLHHHHHLLLLEELLLLEEHHHHHHHLLLLLLLEEEEEEELLEEEEEEEHHHLLL


DSSP  LHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEELLEEEEEEEEEEEELL
Query PLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDXNFECENRP  240
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct PLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDXNFECENRP  240
DSSP  LHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEELLEEEEEEEEEEEELL


DSSP  LLLLLLL
Query GPYEFRE  247
ident |||||||
Sbjct GPYEFRE  247
DSSP  LLLLLLL


No 2: 2DFUA  MOLECULE: PROBABLE 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE               

DSSP  ..LLHH.....................................HHHLLLEEEELLLLLll
Query ..SYNY.....................................LKAARKIICIGRNYAah   21
ident                                                 || | ||||   
Sbjct mkILRFnegrwgvlegelvletdgpggnptgrrydlasvtllpPATPTKIVCVGRNYR..   58
DSSP  leEEEEllleeeeeelleeeeelllllleeeeeeehhhlleelLLLLLLEEEELLLLL..


DSSP  hhhhhlLLLEEEELHHHEELLLLLLlllllllllllllllLLLEEELLLL.LEEELEEEE
Query ikelnnQPFFFLKPTSSIVTPLSSSpanstfnglnedgtnPGPIFIPRGV.KVHHEIELA   80
ident        |  |||       |                     |   |      | | |||
Sbjct ...lpkEPGLFLKGPNALARPGNPR..........dpwgtAEPVPYPFFTeELHYEGELA  105
DSSP  ...lllLLLEEEELHHHEELLLLLL..........lhhhhLLLEEELLLLlLEELLEEEE


DSSP  EEELLLLLLlLLLLhhHLHHHEEEEEEEELLEEHHHHHHHhhhlLLLHHHHHLLLLEELL
Query LIVSKHLSNvTKXKpeEVYDSISGVALALDLTARNVQDEAkkkgLPWTISKGFDTFXPIS  140
ident   |                |   |   | | ||| ||       | |   |  | | |  
Sbjct VVVGDRMRH.VPPE..KALDHVLGYTVAVDITARDVQKKD....LQWVRAKSADKFLPLG  158
DSSP  EEELLLLLL.LLHH..HHHHHEEEEEEEELLEEHHHHHHL....LLLHHHHLLLLLEEEE


DSSP  .LLEEHhhhhhhlllLLLLEEEEEEELLEEEEEEEHHHLLLLHHHHHHHHHLLLLLLLLL
Query .AIVSRekfssyksnLQDIFRVKCSVNGQLRQDGGTNLXLHPLHKILQHISTXISLEPGD  199
ident                      |   ||| ||| | |         ||  |||   ||| |
Sbjct pWLETD........lNPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTLEPLD  210
DSSP  eEEELL........lLLLLLEEEEEELLEEEEEEEHHHLLLLHHHHHHHHHLLLLLLLLL


DSSP  EEELLLLLLLEEELLLLEEEEEEEElleeEEEEEEEEEELLLLLllll
Query IILTGTPAGVGELKPGDRVHCELLQnndnIVDXNFECENRPGPYefre  247
ident   ||||| ||| | ||||                              
Sbjct VVLTGTPEGVGALRPGDRLEVAVEG....VGTLFTLIGPKEERP...w  251
DSSP  EEELLLLLLLLLLLLLLEEEEEELL....LEEEEEEEEEELLLL...l


No 3: 1NR9A  MOLECULE: PROTEIN YCGM;                                              

DSSP  .........LLHHhHHLLLEEEELLLLLllhhhhhlLLLEEEELHHHEELLLllllllll
Query .........SYNYlKAARKIICIGRNYAahikelnnQPFFFLKPTSSIVTPLssspanst   51
ident                   |  | | |||         |  | ||                
Sbjct hxyqhhnwqGALLdYPVSKVVCVGSNYA......peEPVLFIKPETALCDLR........   46
DSSP  lllllllllLLLLlLLLLLEEEELLLLL......llLLLEEEELHHHEEELL........


DSSP  lllllllllllLLEEELLL.LLEEELEEEEEEELLLLLLLLLLlhhHLHHHEEEEEEEEL
Query fnglnedgtnpGPIFIPRG.VKVHHEIELALIVSKHLSNVTKXkpeEVYDSISGVALALD  110
ident             |  ||     |||| |||      |   |      |   | |   |||
Sbjct ...........QPLAIPSDfGSVHHEVELAVLIGATLRQATEE...HVRKAIAGYGVALD   92
DSSP  ...........LLLLLLLLlLLEEELEEEEEEELLLLLLLLHH...HHHHHEEEEEEEEL


DSSP  LEEHHHHHHHHHHLLLLHHHHHLLLLEELLLLEEHHHHHhhllLLLLlEEEEEEELLEEE
Query LTARNVQDEAKKKGLPWTISKGFDTFXPISAIVSREKFSsyksNLQDiFRVKCSVNGQLR  170
ident || | ||   || | ||   | ||   | |       |       |       ||||  |
Sbjct LTLRDVQGKXKKAGQPWEKAKAFDNSCPLSGFIPAAEFT...gDPQN.TTLSLSVNGEQR  148
DSSP  LLLHHHHHHHHHHLLLLHHHHLLLLLEEELLLEEHHHLL...lLHHH.LEEEEEELLEEE


DSSP  EEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEelleeEE
Query QDGGTNLXLHPLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLqnndnIV  230
ident | | |  | |         |    |  ||  ||||| ||| |  ||              
Sbjct QQGTTADXIHKIVPLIAYXSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFD.....GH  203
DSSP  EEEEHHHLLLLHHHHHHHHLLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEL.....LE


DSSP  EEEEEEEElllllllll
Query DXNFECENrpgpyefre  247
ident                  
Sbjct SLTTRVLG.........  211
DSSP  EEEEELLL.........


No 4: 1GTTA  MOLECULE: 4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL            

DSSP  llhhhhhLLLEEEELLLLLL..LHHH..........hhlLLLEEEELHHHEELLLlllll
Query synylkaARKIICIGRNYAA..HIKE..........lnnQPFFFLKPTSSIVTPLssspa   48
ident           |     |                          | ||             
Sbjct ......mKGTIFAVALNHRSqlDAWQeafqqspykappkTAVWFIKPRNTVIGCG.....   49
DSSP  ......lLLLEEEEELLLHHhhHHHLlhhhlllllllllLLEEEEELHHHEELLL.....


DSSP  llllllllllllllLLEEELLLLLEEELEEEEEEELLLLLlLLLLlhHHLHHHEEEEEEE
Query nstfnglnedgtnpGPIFIPRGVKVHHEIELALIVSKHLSnVTKXkpEEVYDSISGVALA  108
ident                ||  | | ||      |||| |          |     | | |||
Sbjct ..............EPIPFPQGEKVLSGATVALIVGKTAT.KVRE..EDAAEYIAGYALA   92
DSSP  ..............LLEEELLLLLEELLEEEEEEELLLLL.LLLH..HHHHHHEEEEEEE


DSSP  ELLEEHhhHHHHHhhlLLLHHHHHLLLLEELLLLEEHHhhhhhlllLLLLEEEEEEELLE
Query LDLTARnvQDEAKkkgLPWTISKGFDTFXPISAIVSREkfssyksnLQDIFRVKCSVNGQ  168
ident  |               |    |  | | ||   |             |        || 
Sbjct NDVSLP..EESFY...RPAIKAKCRDGFCPIGETVALS........NVDNLTIYTEINGR  139
DSSP  ELLLLL..LLLLL...LLLHHHHLLLLLEELLLLLLLL........LLLLLEEEEEELLE


DSSP  EEEEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEelleE
Query LRQDGGTNLXLHPLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLqnndN  228
ident       |          |   |    | ||| || |||    |  |||||          
Sbjct PADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQPGDRVRVLAE....G  195
DSSP  EEEEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEELLLLLLLLEELLLLEEEEEEL....L


DSSP  EEEEEEEEEELLL...............................................
Query IVDXNFECENRPG...............................................  241
ident                                                             
Sbjct FPPLENPVVDEREvttrksfptlphphgtlfalglnyadhpeeplvflkapntltgdnqt  255
DSSP  LLLEEEEEEEHHHlllllllllllllllleeeelllllllllllleeeelhhheelllee


DSSP  ............................................................
Query ............................................................  241
ident                                                             
Sbjct svrpnnieymhyeaelvvvigkqarnvseadamdyvagytvcndyairdylenyyrpnlr  315
DSSP  eeelllllleelleeeeeeelllllllllllhhhheeeeeeeelleehhhllllllllhh


DSSP  ............................................................
Query ............................................................  241
ident                                                             
Sbjct vksrdgltpmlstivpkeaipdphnltlrtfvngelrqqgttadlifsvpfliaylsefm  375
DSSP  hhllllleellllleehhhllllllleeeeeelleeeeeeehhhllllhhhhhhhhhlll


DSSP  ........................................llllll
Query ........................................pyefre  247
ident                                               
Sbjct tlnpgdmiatgtpkglsdvvpgdevvvevegvgrlvnrivseetak  421
DSSP  lllllleeelllllllllllllleeeeeellleeeeeeeeehhhhl


No 5: 1QCOA  MOLECULE: FUMARYLACETOACETATE HYDROLASE;                             

DSSP  ..................LLHH......................................
Query ..................SYNY......................................    4
ident                                                             
Sbjct msfipvaedsdfpiqnlpYGVFstqsnpkprigvaigdqildlsvikhlftgpalskhqh   60
DSSP  llllllllllllllllllEEEEellllllleeeeeelleeeellllhhhlllllllllhh


DSSP  .........................................................HHH
Query .........................................................LKA    7
ident                                                             
Sbjct vfdettlnnfmglgqaawkearaslqnllsasqarlrddkelrqraftsqasatmhlPAT  120
DSSP  hhhllllhhhhhllhhhhhhhhhhhhhhhlllllhhhhlhhhhhhheeehhhleeelLLL


DSSP  LLLEEEELlLLLL...............lhhhhhlLLLEEEELHHHEELLLlllllllll
Query ARKIICIGrNYAA...............hikelnnQPFFFLKPTSSIVTPLssspanstf   52
ident                                     |       ||||            
Sbjct IGDYTDFY.SSRQhatnvgimfrgkenallpnwlhLPVGYHGRASSIVVSG.........  170
DSSP  LLLEEEEL.LLHHhhhhhhhhhllhhhllllllllLLLEEELLLLLEEELL.........


DSSP  llllllllllLLEEELL...............LLLEEELEEEEEEELLLLL...LLLLLl
Query nglnedgtnpGPIFIPR...............GVKVHHEIELALIVSKHLS...NVTKXk   94
ident            ||  |                      | | |  |              
Sbjct ..........TPIRRPMgqmrpdnskppvygaCRLLDMELEMAFFVGPGNRfgePIPIS.  219
DSSP  ..........LLEELLEeeelllllllleeeeLLLEELLEEEEEEELLLLLlllLLLHH.


DSSP  hhHLHHHEEEEEEEELLEEHHHHHHHHhHLLLLHHHHHLllLEELLL.LEEHHHHHHH..
Query peEVYDSISGVALALDLTARNVQDEAKkKGLPWTISKGFdtFXPISA.IVSREKFSSY..  151
ident        | |  |  |  ||  |       |     | |     ||   |          
Sbjct ..KAHEHIFGMVLMNDWSARDIQQWEY.VPLGPFLGKSF..GTTISPwVVPMDALMPFvv  274
DSSP  ..HHHHHEEEEEEEELLEEHHHHHHHL.LLLLLLHHHHL..LEEELLlLEEHHHHHHHee


DSSP  ...............lLLLLLLEEEEEEEL......LEEEEEEEHHHLLLLHHHHHHHHH
Query ...............kSNLQDIFRVKCSVN......GQLRQDGGTNLXLHPLHKILQHIS  190
ident                            |                           | | |
Sbjct pnpkqdpkplpylchsQPYTFDINLSVSLKgegmsqAATICRSNFKHMYWTMLQQLTHHS  334
DSSP  llllllllllhhhlllLLLEELLEEEEEEEllllllLEEEEEEEHHHLLLLHHHHHHHHH


DSSP  LL.LLLLLLLEEELLLL.......LLLE....................EELLLLEEEEEE
Query TX.ISLEPGDIILTGTP.......AGVG....................ELKPGDRVHCEL  222
ident      | |||    ||         |                       |  || |    
Sbjct VNgCNLRPGDLLASGTIsgsdpesFGSMlelswkgtkaidvgqgqtrtFLLDGDEVIITG  394
DSSP  LLlLLLLLLLEEELLLLllllhhhLLLHhhhllllllleellllleelLLLLLLEEEEEE


DSSP  EEL...lEEEEEE.EEEEEELLlllllll
Query LQN...nDNIVDX.NFECENRPgpyefre  247
ident                              
Sbjct HCQgdgyRVGFGQcAGKVLPAL.......  416
DSSP  EEEllllEEELLLeEEEEELLL.......


No 6: 2EB4A  MOLECULE: 2-OXO-HEPT-3-ENE-1,7-DIOATE HYDRATASE;                     

DSSP  ................................................llhhhhhlLLEE
Query ................................................synylkaaRKII   12
ident                                                          |  
Sbjct mfdkhthtliaqrldqaekqreqiraisldypeitiedayavqrewvrlkiaegrtLKGH   60
DSSP  lllhhhhhhhhhhhhhhhhhllllllhhhhlllllhhhhhhhhhhhhhhhhhllllEEEE


DSSP  EELLLLL.lLHHHhhlLLLEEEELHHHEELLLlllllllllllllllllllLLEEELLLL
Query CIGRNYA.aHIKElnnQPFFFLKPTSSIVTPLssspanstfnglnedgtnpGPIFIPRGV   71
ident  ||              |                                   |   |  
Sbjct KIGLTSKamQASSqisEPDYGALLDDMFFHDG...................SDIPTDRFI  101
DSSP  EEELHHHhhLLLLlllLLEEEEEEHHHEELLL...................EEELHHHLL


DSSP  LEEELEEEEEEELLLLLLLLLLlHHHLHHHEEEEEEEELLEEhhHHHHhHHHLL.....l
Query KVHHEIELALIVSKHLSNVTKXkPEEVYDSISGVALALDLTArnVQDEaKKKGL.....p  126
ident     | |||    | |          ||     |  || |                    
Sbjct VPRIEVELAFVLAKPLRGPNCT.LFDVYNATDYVIPALELID..ARCH.NIPRKvfdtis  157
DSSP  LLEEEEEEEEEELLLLLLLLLL.HHHHHHHEEEEEEEEEEEL..LLLL.LLLLHhhhhhh


DSSP  LHHHHHlllLEELL.LLEEHHHHhhhlllLLLLEEEEEEELLEEEEEEEHHHLLLLHHHH
Query WTISKGfdtFXPIS.AIVSREKFssyksnLQDIFRVKCSVNGQLRQDGGTNLXLHPLHKI  185
ident                                         ||     |     |      
Sbjct DNAANA...GVILGgRPIKPDEL......DLRWISALMYRNGVIEETGVAAGVLNHPANG  208
DSSP  LHHHEE...EEEELlLLLLLLLL......LHHHLEEEEEELLEEEEEEEHHHLLLLLLHH


DSSP  HHHHHLLL.....LLLLLLEEELLLLLLLEEELLLLEEEEEEEelleEEEEEEEEEEell
Query LQHISTXI.....SLEPGDIILTGTPAGVGELKPGDRVHCELLqnndNIVDXNFECEnrp  240
ident               || | ||| |          ||  |        |            
Sbjct VAWLANKLapydvQLEAGQIILGGSFTRPVPARKGDTFHVDYG....NMGSISCRFV...  261
DSSP  HHHHHHHHhhhllLLLLLLEEELLLLLLLEELLLLLEEEEELH....HHLEEEEEEL...


DSSP  lllllll
Query gpyefre  247
ident        
Sbjct .......  261
DSSP  .......


No 7: 1SV6A  MOLECULE: 2-KETO-4-PENTENOATE HYDRATASE;                             

DSSP  ...............................................llhhhhhlLLEEE
Query ...............................................synylkaaRKIIC   13
ident                                                             
Sbjct mtkhtleqlaadlrraaeqgeaiaplrdligidnaeaayaiqhinvqhdvaqgrrVVGRK   60
DSSP  llllhhhhhhhhhhhhhhhlllllllhhhhllllhhhhhhhhhhhhhhhhlllllEEEEE


DSSP  ELLLLLL.lhhhhhlLLLEEEELHHHEELLLlllllllllllllllllllLLEEELLLLL
Query IGRNYAA.hikelnnQPFFFLKPTSSIVTPLssspanstfnglnedgtnpGPIFIPRGVK   72
ident  |             || |                                 |   |   
Sbjct VGLTHPKvqqqlgvdQPDFGTLFADMCYGDN...................EIIPFSRVLQ  101
DSSP  EELLLHHhhhlllllLLEEEEEEHHHEEELL...................EEELLLLLLL


DSSP  EEELEEEEEEELLLLLLLlLLLHHHLHHHEEEEEEEELLEEHHH.hHHHH..hhlLLLHH
Query VHHEIELALIVSKHLSNVtKXKPEEVYDSISGVALALDLTARNV.qDEAK..kkgLPWTI  129
ident    | | ||     |         | |  |  |  ||                       
Sbjct PRIEAEIALVLNRDLPAT.DITFDELYNAIEWVLPALEVVGSRIrdWSIQfvdtvADNAS  160
DSSP  LEEEEEEEEEELLLLLLL.LLLHHHHHLLEEEEEEEEEEELLLLllLLLLhhhhhHLHHH


DSSP  HHhlllLEELL.LLEEHHHHhhhlllLLLLEEEEEEELLEEEEEEEHHHLLLL....HHH
Query SKgfdtFXPIS.AIVSREKFssyksnLQDIFRVKCSVNGQLRQDGGTNLXLHP....LHK  184
ident          |                       |   |      |     |         
Sbjct CG....VYVIGgPAQRPAGL......DLKNCAMKMTRNNEEVSSGRGSECLGHplnaAVW  210
DSSP  EE....EEEELlLLLLLLLL......LLLLLEEEEEELLEEEEEEEHHHLLLLhhhhHHH


DSSP  HHHHHHLL.LLLLLLLEEELLLLLLLEEELLLLEEEEEEEElleeEEEEEEEEEElllll
Query ILQHISTX.ISLEPGDIILTGTPAGVGELKPGDRVHCELLQnndnIVDXNFECENrpgpy  243
ident            |  |||||||          |||           |              
Sbjct LARKMASLgEPLRTGDIILTGALGPMVAVNAGDRFEAHIEG....IGSVAATFSS.....  261
DSSP  HHHHHHHLlLLLLLLLEEEEEELLLLEELLLLLEEEEEELL....LEEEEEEELL.....


DSSP  llll
Query efre  247
ident     
Sbjct ....  261
DSSP  ....


No 8: 1HNFA  MOLECULE: CD2;                                                       

DSSP  llhhhhhllleeeelllllllhhhhhlllleeeelhhheellllllllllllllllllll
Query synylkaarkiicigrnyaahikelnnqpffflkptssivtplssspanstfnglnedgt   60
ident                                                             
Sbjct ...........................................................t    1
DSSP  ...........................................................l


DSSP  llLLEEELLLLLeeeleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhh
Query npGPIFIPRGVKvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdea  120
ident          |                                                  
Sbjct naLETWGALGQD................................................   13
DSSP  llEEEEEELLLL................................................


DSSP  hhhllllhhhhhlllLEELL.LLEEHhhhhhhllllllLEEEEEEEL..LEEEEEEEHHH
Query kkkglpwtiskgfdtFXPIS.AIVSRekfssyksnlqdIFRVKCSVN..GQLRQDGGTNL  177
ident                                       |   |                 
Sbjct ...............INLDIpSFQMS..........ddIDDIKWEKTsdKKKIAQFRKEK   48
DSSP  ...............EEELLlLLLLL..........llEEEEEEEEHhhLLEEEEELHHH


DSSP  LlllhhhhhhhhhllllllllleeelllLLLLE................eeLLLLEEEEE
Query XlhplhkilqhistxislepgdiiltgtPAGVG................elKPGDRVHCE  221
ident                                                       |     
Sbjct E...........................TFKEKdtyklfkngtlkikhlktDDQDIYKVS   81
DSSP  L...........................EEELLlleeellllleeellllhHHLEEEEEE


DSSP  EEEL.LEEEEEEEEEEEELLLL......................................
Query LLQN.NDNIVDXNFECENRPGP......................................  242
ident        |     |                                              
Sbjct IYDTkGKNVLEKIFDLKIQERVskpkiswtcinttltcevmngtdpelnlyqdgkhlkls  141
DSSP  EEELlLLEEEEEEEEEEEELLLllleeeeelllleeeeellllllleeeeeellleeeee


DSSP  .................................lllll
Query .................................yefre  247
ident                                       
Sbjct qrvithkwttslsakfkctagnkvskessvepvscpek  179
DSSP  llleeeelllleeeeeeeeeelllleeeeeeeeeelll


No 9: 1I85A  MOLECULE: T LYMPHOCYTE ACTIVATION ANTIGEN CD86;                      

DSSP  llhhhhhllleeeelllllllhhhhhlllleeeelhhheellllllllllllllllllll
Query synylkaarkiicigrnyaahikelnnqpffflkptssivtplssspanstfnglnedgt   60
ident                                                             
Sbjct ............................................................    0
DSSP  ............................................................


DSSP  lLLLEEELLLLleeeleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhh
Query nPGPIFIPRGVkvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdea  120
ident     |                                                       
Sbjct .MLKIQAYFNE.................................................   10
DSSP  .LLEEEEELLL.................................................


DSSP  hhhllllhhhhhlllLEEL.LLLEEHHhhhhhlllLLLLEEEEEEELLEEE.EEEEHHHl
Query kkkglpwtiskgfdtFXPI.SAIVSREkfssyksnLQDIFRVKCSVNGQLR.QDGGTNLx  178
ident                         |                |       |          
Sbjct ..............tADLPcQFANSQN.......qSLSELVVFWQDQENLVlNEVYLGK.   48
DSSP  ..............lEEELlLLLLLLL.......lLLLLLEEEEELLLLLEeEEELLLL.


DSSP  lllhhhhhhhhhllllllllleeelLLLLLLE.....................eeLLLLE
Query lhplhkilqhistxislepgdiiltGTPAGVG.....................elKPGDR  217
ident                               |                        |    
Sbjct .........................EKFDSVHskymgrtsfdsdswtlrlhnlqiKDKGL   83
DSSP  .........................LLLLLLLlllllleeelllllleeelllllLLLLE


DSSP  EEEEEEEL....LEEEEEEEEEEEELLlllllll
Query VHCELLQN....NDNIVDXNFECENRPgpyefre  247
ident   |            |   | |            
Sbjct YQCIIHHKkptgMIRIHQMNSELSVLA.......  110
DSSP  EEEEEELLllllLLEEEEEEEEEEEEL.......


No 10: 2PN5A  MOLECULE: THIOESTER-CONTAINING PROTEIN I;                            

DSSP  ........................................llhhhhhllleeeellllll
Query ........................................synylkaarkiicigrnyaa   20
ident                                                             
Sbjct llvvgpkfiranqeytlvisnfnsqlskvdlllklelsvlnvtkmvdvrrnmnrminfnm   60
DSSP  leeeeeleelllleeeeeeeelllllleeeeeeeelllllleeeeeeeelleeeeeeeel


DSSP  lhhhhhlllleeeelhhheellllllllllllllllllllllLLEEEllllLEEELEEEE
Query hikelnnqpffflkptssivtplssspanstfnglnedgtnpGPIFIprgvKVHHEIELA   80
ident                                                             
Sbjct pedltagnykitidgqrgfsfhkeaelvylsksisgliqvdkPVFKP....GDTVNFRVI  116
DSSP  lllllllleeeeeeeellllleeeeeeeelllleeeeeeellLEELL....LLEEEEEEE


DSSP  EeelllllllllllhhhlhHHEEeeeeeelleehhhhhhhhhhllllhhhhhlllleell
Query LivskhlsnvtkxkpeevyDSISgvalaldltarnvqdeakkkglpwtiskgfdtfxpis  140
ident                                                             
Sbjct V................ldTELK.....................................  123
DSSP  E................eeLLLL.....................................


DSSP  lleehhhhhhhLLLLLLlEEEEEEEL.LEEEEEEEHhhllllhhhhhhhhhlllllllll
Query aivsrekfssyKSNLQDiFRVKCSVN.GQLRQDGGTnlxlhplhkilqhistxislepgd  199
ident                     |              |                        
Sbjct ..........pPARVKS.VYVTIRDPqRNVIRKWST....................akly  152
DSSP  ..........lLLLLLE.EEEEEELLlLLEEEEEEE....................eell


DSSP  eeELLLlllLEEE..llLLEEEEEEEELLEEEEEEEEEEEELLLL...............
Query iiLTGTpagVGEL..kpGDRVHCELLQNNDNIVDXNFECENRPGP...............  242
ident                                 |   ||                      
Sbjct agVFES..dLQIAptpmLGVWNISVEVEGEELVSKTFEVKEYVLStfdvqvmpsviplee  210
DSSP  llEEEE..eEELLllllLEEEEEEEEELLEEEEEEEEEELLLLLLleeeeeeelllllhh


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct hqavnltieanyhfgkpvqgvakvelyldddklklkkeltvygkgqvelrfdnfamdadq  270
DSSP  hleeeeeeeeeelllllleeeeeeeeeelllleeeeeeeeeeleeeeeeellllllllle


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct qdvpvkvsfveqytnrtvvkqsqitvyryayrvelikespqfrpglpfkcalqfthhdgt  330
DSSP  eeeeeeeeeeellllleeeeeeeeeeelllleeeeeelllllllllleeeeeeeelllll


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct pakgisgkvevsdvrfettttsdndgliklelqpsegteqlsihfnavdgfffyedvnkv  390
DSSP  llllleeeeeehhhleeeeeellllleeeeeellllllleeeeeeellllleeeeeeell


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct etvtdayiklelkspikrnklmrfmvtctermtffvyyvmskgniidagfmrpnkqpkyl  450
DSSP  llllllleeeeelllllllleeeeeeeeeeeelleeeeeelllleeeeeeelllleeeee


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct lqlnatekmiprakiliatvagrtvvydfadlafqelrnnfdlsideqeikpgrqielsm  510
DSSP  eeeellhhhlleeeeeeeeeelleeeeeeeeeelhhhlllleeeellllllllleeeeee


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct sgrpgayvglaaydkalllfnknhdlfwedigqvfdgfhenefdifhslglfartlddil  570
DSSP  ellllleeeeeeeehhhhhhllllllhhhhhhhhhlllllllllhhhhhleeeeelllle


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct fdsqeswlwknvsigrsgsrklievvpdtttswyltgfsidpvyglgiikkpiqfttvqp  630
DSSP  ellllllllleeellllleeeeeeellllleeeeeeeeeeellleeeelllleeeeelll


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct fyivenlpysikrgeavvlqftlfnnlgaeyiadvtlynvanqtefvgrpntdlsytksv  690
DSSP  eeeeeellleeellleeeeeeeeeellllleeeeeeeelhhhleeelllllllleeeeee


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct svppkvgvpisflikarklgemavrvkasimlghetdalekvirvmpeslvqprmdtrff  750
DSSP  eellllleeeeeeeeellleeeeeeeeeelllllleeeeeeeeeeellllllleeeeeee


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct cfddhknqtfpinldinkkadsgstkiefrlnpnllttviknldhllgvptgcgeqnmvk  810
DSSP  eeeeeeeeeeeeelllllllllllleeeeeeellllhhhhhllllllllllllllhhhhh


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct fvpnilvldylhaigskeqhlidkatnllrqgyqnqmryrqtdgsfglwettngsvflta  870
DSSP  lhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhhhhllllllllllllllllhhhhh


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct fvgtsmqtavkyisdidaamvekaldwlaskqhfsgrfdkagaeyhkemqgglrngvalt  930
DSSP  hhhhhhhhhllllllllhhhhhhhhhhhhhllllllllllllllllhhhhllllllhhhh


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct syvlmallendiakakhaeviqkgmtylsnqfgsinnaydlsiatyammlnghtmkeeal  990
DSSP  hhhhhhhhllhhhhhhlhhhhhhhhhhhhhhhhhlllhhhhhhhhhhhhhhllllhhhhh


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct nklidmsfidadknerfwnttnpiettayallsfvmaekytdgipvmnwlvnqryvtgsf 1050
DSSP  hhhhhlleeelllleeelllllhhhhhhhhhhhhhhlllhhhhhhhhhhhhlllllllll


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct pstqdtfvglkaltkmaekispsrndytvqlkykksakyfkinseqidvenfvdipedtk 1110
DSSP  llhhhhhhhhhhhhhhhhhhllllleeeeeeeelleeeeeeelllllllllleellllll


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct kleinvggigfgllevvyqfnlnlvnfenrfqldlekqntgsdyelrlkvcasyipqltd 1170
DSSP  eeeeeeeeeeeeeeeeeeellllllleeeleeeeeeeelllllleeeeeeeeeellllll


DSSP  ...................................lLLLL....................
Query ...................................yEFRE....................  247
ident                                                             
Sbjct rrsnmalievtlpsgyvvdrnpiseqtkvnpiqkteIRYGgtsvvlyydnmgserncftl 1230
DSSP  llllleeeeeelllleeeeeeeeellllllllleeeEELLlleeeeeellllllleeeee


DSSP  .....................................................
Query .....................................................  247
ident                                                      
Sbjct tayrrfkvalkrpayvvvydyyntnlnaikvyevdkqnlceicdeedcpaecg 1283
DSSP  eeeellleelllleeeeeeelleeeeeeeeeellllllhhhhlllllllllll


No 11: 1I8LA  MOLECULE: T LYMPHOCYTE ACTIVATION ANTIGEN CD80;                      

DSSP  llhhhhhllleeeelllllllhhhhhlllleeeelhhheellllllllllllllllllll
Query synylkaarkiicigrnyaahikelnnqpffflkptssivtplssspanstfnglnedgt   60
ident                                                             
Sbjct ............................................................    0
DSSP  ............................................................


DSSP  llLLEEELLLLLeeeleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhh
Query npGPIFIPRGVKvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdea  120
ident                                                             
Sbjct .vIHVTKEVKEV................................................   11
DSSP  .lEEEEEELLLL................................................


DSSP  hhhllllhhhhhlllLEEL.LLLEehhhhhhhllLLLLLEEEEEEELLEEEEEEEHHHll
Query kkkglpwtiskgfdtFXPI.SAIVsrekfssyksNLQDIFRVKCSVNGQLRQDGGTNLxl  179
ident                        |                |                   
Sbjct ...............ATLScGHNV........svEELAQTRIYWQKEKKMVLTMMSGD..   46
DSSP  ...............EEELlLLLL........lhHHHLLEEEEEEELLEEEEEEELLE..


DSSP  llhhhhhhhhhllllllllleeellLLLLLE....................eeLLLLEEE
Query hplhkilqhistxislepgdiiltgTPAGVG....................elKPGDRVH  219
ident                                                             
Sbjct .........................MNIWPEyknrtifditnnlsivilalrpSDEGTYE   81
DSSP  .........................EEELLLlllleeeellllleeeellllhHHLEEEE


DSSP  EEEEEL....LEEEEEEEEEEEELLLL.................................
Query CELLQN....NDNIVDXNFECENRPGP.................................  242
ident |  |                                                        
Sbjct CVVLKYekdaFKREHLAEVTLSVKADFptpsisdfeiptsnirriicstsggfpephlsw  141
DSSP  EEEEEEelleEEEEEEEEEEEEEELLLllleeeeeellllleeeeeeeeeeellleeeee


DSSP  .....................................................lllll
Query .....................................................yefre  247
ident                                                           
Sbjct lengeelnainttvsqdpetelyavsskldfnmttnhsfmclikyghlrvnqtfnwnt  199
DSSP  elllllllllleeeeelllllleeeeeeeeeellllleeeeeeeelleeelleeelll


No 12: 2J12B  MOLECULE: FIBER PROTEIN;                                             

DSSP  llhhhhhllleeeelllllllhhhhhlllleeeelhhheellllllllllllllllllll
Query synylkaarkiicigrnyaahikelnnqpffflkptssivtplssspanstfnglnedgt   60
ident                                                             
Sbjct ......................................................slsitt    6
DSSP  ......................................................lleell


DSSP  llLLEEELLLLleeeleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhh
Query npGPIFIPRGVkvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdea  120
ident     |    |                                                  
Sbjct peEMIEKAKGE.................................................   17
DSSP  leEEEEELLLL.................................................


DSSP  hhhllllhhhhhlllLEELLLLEEHHHHhhhllllllLEEEEEEEL.......LEEEEEE
Query kkkglpwtiskgfdtFXPISAIVSREKFssyksnlqdIFRVKCSVN.......GQLRQDG  173
ident                                                       |     
Sbjct ..............tAYLPCKFTLSPED.......qgPLDIEWLISpadnqkvDQVIILY   56
DSSP  ..............lEEELLLEELLLLL.......llLEEEEEEELlllllllLEEEEEE


DSSP  EHHHllllhhhhhhhhhllllllllleeellLLLLLE.......................
Query GTNLxlhplhkilqhistxislepgdiiltgTPAGVG.......................  210
ident                                                             
Sbjct SGDK...........................IYDDYYpdlkgrvhftsndlksgdasinv   89
DSSP  ELLE...........................EELLLLhhhllleeellllhhhlllleee


DSSP  ...eeLLLLEEEEEEEELLEeEEEEEEEEEELllllllll
Query ...elKPGDRVHCELLQNNDnIVDXNFECENRpgpyefre  247
ident             |                           
Sbjct tnlqlSDIGTYQCKVKKAPG.VANKKIHLVVL........  120
DSSP  llllhHHLEEEEEEEEELLE.EEEEEEEEEEL........


No 13: 2HUHA  MOLECULE: PUTATIVE DNA MISMATCH REPAIR PROTEIN;                      

DSSP  llhhhhhllleeeelllllllhhhhhlllleeeelhhheellllllllllllllllllll
Query synylkaarkiicigrnyaahikelnnqpffflkptssivtplssspanstfnglnedgt   60
ident                                                             
Sbjct ............................................................    0
DSSP  ............................................................


DSSP  lLLLEEElllllEEELEEEEEEELL.LLLLlllllhhhlhhheEEEEEEELL.eehhhhh
Query nPGPIFIprgvkVHHEIELALIVSK.HLSNvtkxkpeevydsiSGVALALDL.tarnvqd  118
ident    |              ||                           |  |         
Sbjct .RQPEVR...ggDTLNVFLAYVPEDaKAXX..........ttpFEAYLVNDSnyylyyty   46
DSSP  .LLLLLL...llLLLLEEEEEEELLlLLLL..........lllEEEEEEELLlleeeeee


DSSP  hhhhhllllhhhhhlllLEELLLLEEHhhhHHHLLLLLLlEEEEEEEL.......LEEEE
Query eakkkglpwtiskgfdtFXPISAIVSRekfSSYKSNLQDiFRVKCSVN.......GQLRQ  171
ident                                           |                 
Sbjct lsaegkawnnrshglvePNTKLLLEEF..tKDVLNEXER.VAVQLIAFkdgkpaaIKPAV  103
DSSP  eeeelleeeeeeeeeelLLEEEEEEEE..lHHHHHHLLL.EEEEEEEElllllllLLLLE


DSSP  EEEHHhlllLHHHHHHHHH..lllllllLLEEELLLLllleeelllleeeeeeeelleee
Query DGGTNlxlhPLHKILQHIS..txislepGDIILTGTPagvgelkpgdrvhcellqnndni  229
ident                                                             
Sbjct SVELR....IDTVKFYKLHtfsasdffeEPALIYDIV.......................  136
DSSP  EEEEL....LLHHHHHLHHhleeelleeEEEEEEEEE.......................


DSSP  eeeeeeeeelllllllll
Query vdxnfecenrpgpyefre  247
ident                   
Sbjct .......kddvpakqvyv  147
DSSP  .......elleellllll


No 14: 2DRUA  MOLECULE: CHIMERA OF CD48 ANTIGEN AND T-CELL SURFACE                 

DSSP  llhhhhhllleeeelllllllhhhhhlllleeeelhhheellllllllllllllllllll
Query synylkaarkiicigrnyaahikelnnqpffflkptssivtplssspanstfnglnedgt   60
ident                                                             
Sbjct ........................................................fqdq    4
DSSP  ........................................................llll


DSSP  llLLEEELLLLleeeleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhh
Query npGPIFIPRGVkvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdea  120
ident          |                                                  
Sbjct svPNVNAITGS.................................................   15
DSSP  llLEEEEELLL.................................................


DSSP  hhhllllhhhhhlllLEEL.LLLEehhhhhhhllllllLEEEEEEELL.EEEEEEEHHHL
Query kkkglpwtiskgfdtFXPI.SAIVsrekfssyksnlqdIFRVKCSVNG.QLRQDGGTNLX  178
ident                                         |        |       |  
Sbjct ..............nVTLTiLKHP...........lasYQRLTWLHTTnQKILEYFPNGK   50
DSSP  ..............lEEELlLLLL...........lllLLEEEEELLLlLEEEEELLLLL


DSSP  lllhhhhhhhhhllllllllleeellLLLLLEE....................eLLLLEE
Query lhplhkilqhistxislepgdiiltgTPAGVGE....................lKPGDRV  218
ident                                                             
Sbjct ..........................KTVFESVfkdrvdldktngalriynvskEDRGDY   84
DSSP  ..........................EEELLLLlllleeelllllleeellllhHHLEEE


DSSP  EEEEEElLEEEeEEEEEEEELLLL....................................
Query HCELLQnNDNIvDXNFECENRPGP....................................  242
ident     |             |                                         
Sbjct YMRMLH.ETED.QWKITMEVYEMVskpmiywecsnatltcevlegtdvelklyqgkehlr  142
DSSP  EEEEEL.LLEE.EEEEEEEEELLLllleeeeehhhleeeeellllllleeeeeelleeee


DSSP  .................................lllll
Query .................................yefre  247
ident                                       
Sbjct slrqktmsyqwtnlrapfkckavnrvsqesemevvncp  180
DSSP  eellleeeeellllllleeeeeeelleeeeeeelllll


No 15: 2IF7A  MOLECULE: SLAM FAMILY MEMBER 6;                                      

DSSP  llhhhhhllleeeelllllllhhhhhlllleeeelhhheellllllllllllllllllll
Query synylkaarkiicigrnyaahikelnnqpffflkptssivtplssspanstfnglnedgt   60
ident                                                             
Sbjct ...........................................................l    1
DSSP  ...........................................................l


DSSP  lllLEEELlllleeeleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhh
Query npgPIFIPrgvkvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdea  120
ident                                                             
Sbjct tplMVNGI....................................................    9
DSSP  lleEEEEE....................................................


DSSP  hhhllllhhhhhlLLLEELL.LLEEhhhhhhhlllllllEEEEEEELLEEEEEEEHhhLL
Query kkkglpwtiskgfDTFXPIS.AIVSrekfssyksnlqdiFRVKCSVNGQLRQDGGTnlXL  179
ident                                               |             
Sbjct ...........lgESVTLPLeFPAG...........ekvNFITWLFNETSLAFIVP..HE   45
DSSP  ...........llLLEEELLlLLLL...........lllLEEEEEELLEEEEEEEL..LL


DSSP  LLhhhhhhhhhllllllllleeeLLLLLLLE....................eeLLLLEEE
Query HPlhkilqhistxislepgdiilTGTPAGVG....................elKPGDRVH  219
ident                                                             
Sbjct TK.....................SPEIHVTNpkqgkrlnftqsyslqlsnlkmEDTGSYR   84
DSSP  LL.....................LLEEEELLhhhhlleeellllleeellllhHHLEEEE


DSSP  EEEEELLEEeEEEEEEEEELLLL.......................LLLL..........
Query CELLQNNDNiVDXNFECENRPGP.......................YEFR..........  246
ident                                                             
Sbjct AQISTKTSA.KLSSYTLRILRQLrniqvtnhsqnmtcelhltcsveDADDnvsfrwealg  143
DSSP  EEEELLLLE.EEEEEEEEEELLLeeeeeeelllllleeeeeeeeeeLLLLlleeeeeell


DSSP  ............................................l
Query ............................................e  247
ident                                              
Sbjct ntlssqpnltvswdprisseqdytciaenavsnlsfsvsaqklce  188
DSSP  eeeellleeeeeelllllllleeeeeeeelleeeeeeeehhhhll


No 16: 2GJ7E  MOLECULE: IG GAMMA-1 CHAIN C REGION;                                 

DSSP  llhhhhhllleeeelllllllhhhhhlllleeeelhhheellllllllllllllllllll
Query synylkaarkiicigrnyaahikelnnqpffflkptssivtplssspanstfnglnedgt   60
ident                                                             
Sbjct ....................................................rgvtvrme    8
DSSP  ....................................................lleeeeee


DSSP  lLLLEEELLLLLEeeleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhh
Query nPGPIFIPRGVKVhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdea  120
ident  |  |    |                                                  
Sbjct tPEAILFSPGETF...............................................   21
DSSP  lLLEEELLLLLLE...............................................


DSSP  hhhllllhhhhhlllLEELLLLEEHHhhhhhLLLLLlLEEEEEEEL..............
Query kkkglpwtiskgfdtFXPISAIVSREkfssyKSNLQdIFRVKCSVN..............  166
ident                    |                    |                   
Sbjct ...............STNVSIHAIAH.....DDQTY.SMDVVWLRFdvptscaemriyes   60
DSSP  ...............ELLLEEEEEEL.....LLLLE.EEEEEEEEElllllllleeeehh


DSSP  .......................lEEEEEEEHHhllllhhhhhhhhhllllllllleeel
Query .......................gQLRQDGGTNlxlhplhkilqhistxislepgdiilt  203
ident                                                             
Sbjct clyhpqlpeclspadapcaastwtSRLAVRSYA...............gcsrtnppprcs  105
DSSP  hhhllllhhhhllllhhheellllLLLEEEEEE...............eellllllllle


DSSP  llLLLLEE..................ellLLEEEEEEEELLEEEEEEEEEEEELL....l
Query gtPAGVGE..................lkpGDRVHCELLQNNDNIVDXNFECENRP....g  241
ident                                   |    |                    
Sbjct aeAHMEPVpglawqaasvnlefrdaspqhSGLYLCVVYVNDHIHAWGHITISTAAqyrna  165
DSSP  eeEEELLLlleeelllllleeellllhhhLEEEEEEEEELLEEEEEEEEEEELLLlllle


DSSP  llllll
Query pyefre  247
ident       
Sbjct vveqpl  171
DSSP  eeelll


No 17: 2FRGP  MOLECULE: TREM-LIKE TRANSCRIPT-1;                                    

DSSP  llhhhhhllleeeelllllllhhhhhlllleeeelhhheellllllllllllllllllll
Query synylkaarkiicigrnyaahikelnnqpffflkptssivtplssspanstfnglnedgt   60
ident                                                             
Sbjct ..........................................................gs    2
DSSP  ..........................................................ll


DSSP  llLLEEELLLLLeeeleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhh
Query npGPIFIPRGVKvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdea  120
ident        | |                                                  
Sbjct lpEVLQAPVGSS................................................   14
DSSP  llEEEEELLLLL................................................


DSSP  hhhllllhhhhhlllLEELLLLEEHhhhhhhllllllLEEEEEEEL....LEEEEEEEHh
Query kkkglpwtiskgfdtFXPISAIVSRekfssyksnlqdIFRVKCSVN....GQLRQDGGTn  176
ident                                                    |        
Sbjct ...............ILVQCHYRLQ..........dvKAQKVWCRFlpegCQPLVSSAV.   48
DSSP  ...............EEEEEELLHH..........hlLLEEEEEEEelleEEEEEELLL.


DSSP  hllllhhhhhhhhhllllllllleeeLLLLLLLEE...................elLLLE
Query lxlhplhkilqhistxislepgdiilTGTPAGVGE...................lkPGDR  217
ident                                                             
Sbjct ..........................DRRAPAGRRtfltdlgggllqvemvtlqeeDAGE   82
DSSP  ..........................LLEEEELLLeeeeeeelleeeeeellllhhHLEE


DSSP  EEEEEEELlEEEEE.EEEEEEELLLllllll
Query VHCELLQNnDNIVD.XNFECENRPGpyefre  247
ident   |                    |       
Sbjct YGCMVDGA.RGPQIlHRVSLNILPP......  106
DSSP  EEEEEEEL.LEEEEeEEEEEEELLL......


No 18: 1JMAA  MOLECULE: HERPESVIRUS ENTRY MEDIATOR;                                

DSSP  llhhhhhllleeeelllllllHHHHHL....................LLLEeeelhhhee
Query synylkaarkiicigrnyaahIKELNN....................QPFFflkptssiv   40
ident                                                             
Sbjct ....................kYALADAslkmadpnrfrgkdlpvldqLTDP.....pgvr   35
DSSP  ....................lLLLLLHhhhlllllllllllllllleELLL.....llle


DSSP  llllllllllllllllllllllLLEEEL.LLLLEeeleeeeeeelllllllllllhhhlh
Query tplssspanstfnglnedgtnpGPIFIP.RGVKVhheielalivskhlsnvtkxkpeevy   99
ident                                  |                          
Sbjct rvyhiqaglpdpfqppslpitvYYAVLErACRSV..........................   69
DSSP  eelllllllllllllllllleeEEEEELlLLLEE..........................


DSSP  hheeeeeeeelleehhhhhhhhhhllllhhhhhlllLEELLLL..EEHHHHHH.HLLLLL
Query dsisgvalaldltarnvqdeakkkglpwtiskgfdtFXPISAI..VSREKFSS.YKSNLQ  156
ident                                                    |        
Sbjct ....................................LLNAPSEapQIVRGASEdVRKQPY   93
DSSP  ....................................EELLLLLhhHHHHLLLHhHHLLLE


DSSP  lLEEEEEEEL....LEEEEEEEHHhllllhhhhhhhhhllllllllleeelllLLLLEE.
Query dIFRVKCSVN....GQLRQDGGTNlxlhplhkilqhistxislepgdiiltgtPAGVGE.  211
ident                                                      |      
Sbjct .NLTIAWFRMggncAIPITVMEYT.............ecsynkslgacpirtqPRWNYYd  139
DSSP  .EEEEEEEEEelleEEEEEEEEEE.............eelllllllllleeelLEELLLl


DSSP  ..................ellLLEEEEEEEELLEEeEEEEEEEEELLLLLLLL.......
Query ..................lkpGDRVHCELLQNNDNiVDXNFECENRPGPYEFR.......  246
ident                                |        |  | |              
Sbjct sfsavsednlgflmhapafetAGTYLRLVKINDWT.EITQFILEHRAKGSCKYalplrip  198
DSSP  lleeelllllleeeelllhhhLEEEEEEEEELLEE.EEEEEEEEELLLLLLLLlllllll


DSSP  ............................................................
Query ............................................................  246
ident                                                             
Sbjct psaclspqayqqgvtvdsigmlprfipenqrtvavyslkiagwhgpkapytstllppels  258
DSSP  hhhlllhhhhhlllllllllleelllhhhhhhhhhhhhhlllllllllleelllllhhhh


DSSP  l
Query e  247
ident  
Sbjct e  259
DSSP  l


No 19: 1CN4A  MOLECULE: PROTEIN (ERYTHROPOIETIN RECEPTOR);                         

DSSP  llhhhhhllleeeelllllllhhhhhlllLEEE...ELHHHEelllllllllllllllll
Query synylkaarkiicigrnyaahikelnnqpFFFL...KPTSSIvtplssspanstfnglne   57
ident                                     |                       
Sbjct .............................PDPKfesKAALLA..................   13
DSSP  .............................LLHHhhhHHHHHH..................


DSSP  llllllleeelllLLEEELeEEEEEElllllllllllhhhlhhheeeeeeeelleehhhh
Query dgtnpgpifiprgVKVHHEiELALIVskhlsnvtkxkpeevydsisgvalaldltarnvq  117
ident                                                             
Sbjct .argpeellcfteRLEDLV.CFWEEA..................................   37
DSSP  .llllllleeellLLLLLE.EEEEEL..................................


DSSP  hhhhhhllllhhhhhlllleelllleehhhhhhhLLLLL.LLEEEEEEEL.LEEEEEEEh
Query deakkkglpwtiskgfdtfxpisaivsrekfssyKSNLQ.DIFRVKCSVN.GQLRQDGGt  175
ident                                                             
Sbjct .................................aSAGVGpGQYSFSYQLEdEPWKLCRL.   63
DSSP  .................................lLLLLLlLLEEEEEEELlLLLEEELL.


DSSP  hhllllhhhhhhhhhlllllLLLLeeELLLllLLEEELLLLEEEEEEEEL.LEEEEEEEE
Query nlxlhplhkilqhistxislEPGDiiLTGTpaGVGELKPGDRVHCELLQN.NDNIVDXNF  234
ident                       |                                     
Sbjct ...............hqaptARGA.vRFWCslPTADTSSFVPLELRVTAAsGAPRYHRVI  107
DSSP  ...............eeeelLLLL.eEEEEelLHHHLLLLLLEEEEEEELlLLLLLEEEE


DSSP  EEE.........................................................
Query ECE.........................................................  237
ident                                                             
Sbjct HINevvlldapvglvarladesghvvlrwlpppetpmtshiryevdvsagqgagsvqrve  167
DSSP  LLLlleelllleeeelllllllllleeeeelllllllhhheeeeeeeellllllleeeee


DSSP  .........................eLLLL...............lllll
Query .........................nRPGP...............yefre  247
ident                              |                    
Sbjct ilegrtecvlsnlrgrtrytfavrarMAEPsfggfwsewsepvslltpsd  217
DSSP  ellllleeelllllllleeeeeeeeeELLLllleellllllleeeellll


No 20: 1F97A  MOLECULE: JUNCTION ADHESION MOLECULE;                                

DSSP  llhhhhhllleeeelllllllhhhhhlllleeeelhhheellllllllllllllllllll
Query synylkaarkiicigrnyaahikelnnqpffflkptssivtplssspanstfnglnedgt   60
ident                                                             
Sbjct ......................................................kgsvyt    6
DSSP  ......................................................lleeel


DSSP  LLLLEEELLLLleeeleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhh
Query NPGPIFIPRGVkvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdea  120
ident        |                                                    
Sbjct AQSDVQVPENE.................................................   17
DSSP  LLLEEEEELLL.................................................


DSSP  hhhllllhhhhhlllLEELLLLEEhhhhhhhlllllLLEEEEEEEL....LEEEEEEehh
Query kkkglpwtiskgfdtFXPISAIVSrekfssyksnlqDIFRVKCSVN....GQLRQDGgtn  176
ident                                        ||           |       
Sbjct ..............sIKLTCTYSG...........fSSPRVEWKFVqgstTALVCYN...   49
DSSP  ..............lEEEELEEEL...........lLLEEEEEEEEelleEEEEEEL...


DSSP  hllllhhhhhhhhhllllllllleeelllLLLLE.................eeLLLLEEE
Query lxlhplhkilqhistxislepgdiiltgtPAGVG.................elKPGDRVH  219
ident                                                      |      
Sbjct ............................sQITAPyadrvtfsssgitfssvtrKDNGEYT   81
DSSP  ............................lEELHHhllleeeelleeeellllhHHLEEEE


DSSP  EEEEELLE.eEEEEEEEEEELLLL....................................
Query CELLQNND.nIVDXNFECENRPGP....................................  242
ident |                      |                                    
Sbjct CMVSEEGGqnYGEVSIHLTVLVPPskptisvpssvtignravltcsehdgsppseyswfk  141
DSSP  EEEEELLLllEEEEEEEEEEELLLllleeellleeelllleeeeeelllllllleeeeee


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct dgismlttrafmnssftidpksgdlifdpvtafdsgeyycqaqngygtamrseaahmdav  201
DSSP  lleellllllllllleeelllllleeellllhhhleeeeeeeelllllleellleeeeee


DSSP  .lllll
Query .yefre  247
ident       
Sbjct elnvgg  207
DSSP  llllll