DaliLite: Structural Neighbours

Query: 1NKQF MOLECULE: HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1NKQ-A 43.3  0.5  240   247  100   HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1                 "         
   2:  2DFU-A 26.0  1.9  199   251   33   PROBABLE 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE               "         
   3:  1NR9-A 25.4  2.5  200   211   35   PROTEIN YCGM;                                              "         
   4:  1GTT-A 22.3  2.3  188   421   27   4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL            "         
   5:  1QCO-A 18.9  2.5  205   416   20   FUMARYLACETOACETATE HYDROLASE;                             "         
   6:  1SV6-A 15.7  3.1  188   261   19   2-KETO-4-PENTENOATE HYDRATASE;                             "         
   7:  2EB4-A 15.3  2.8  184   261   18   2-OXO-HEPT-3-ENE-1,7-DIOATE HYDRATASE;                     "         
   8:  1I8L-A  3.0  3.3   78   199    5   T LYMPHOCYTE ACTIVATION ANTIGEN CD80;                      "         
   9:  2PN5-A  2.9  3.7   83  1283    6   THIOESTER-CONTAINING PROTEIN I;                            "         
  10:  2ICC-A  2.8  2.8   77   119   12   V-SET AND IMMUNOGLOBULIN DOMAIN-CONTAINING                 "         
  11:  1CN4-A  2.8  3.5   86   217    2   PROTEIN (ERYTHROPOIETIN RECEPTOR);                         "         
  12:  2IF7-A  2.6  5.4   80   188    1   SLAM FAMILY MEMBER 6;                                      "         
  13:  2DRU-A  2.6  3.1   74   180    8   CHIMERA OF CD48 ANTIGEN AND T-CELL SURFACE                 "         
  14:  1GSM-A  2.6  3.1   70   206   10   MUCOSAL ADDRESSIN CELL ADHESION MOLECULE-1;                "         
  15:  2CH8-A  2.5  3.1   73   188    8   33 KDA EARLY PROTEIN;                                      "         
  16:  1JMA-A  2.3  3.9   94   259    9   HERPESVIRUS ENTRY MEDIATOR;                                "         
-

No 1: 1NKQA  MOLECULE: HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1                 

DSSP  LLLHHHHLLLEEEELLLLLLL......LLLEEEELHHHEELLLL.LLLLLLLLLLLLLLL
Query SYNYLKAARKIICIGRNYAAH......QPFFFLKPTSSIVTPLS.SPANSTFNGLNEDGT   53
ident |||||||||||||||||||||      ||||||||||||||||| |||||||||||||||
Sbjct SYNYLKAARKIICIGRNYAAHikelnnQPFFFLKPTSSIVTPLSsSPANSTFNGLNEDGT   60
DSSP  LLHHHHHLLLEEEELLLLLLLhhhhhlLLLEEEELHHHEELLLLlLLLLLLLLLLLLLLL


DSSP  LLLLEEELLLLLEELLEEEEEEELLLLLLLLLLLHHHLHHHEEEEEEEELLEEHHHHHHH
Query NPGPIFIPRGVKVHHEIELALIVSKHLSNVTKXKPEEVYDSISGVALALDLTARNVQDEA  113
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct NPGPIFIPRGVKVHHEIELALIVSKHLSNVTKXKPEEVYDSISGVALALDLTARNVQDEA  120
DSSP  LLLLEEELLLLLEEELEEEEEEELLLLLLLLLLLHHHLHHHEEEEEEEELLEEHHHHHHH


DSSP  HHHLLLLHHHHHLLLLEELLLLEEHHHLHHHLLLLLLLEEEEEEELLEEEEEEEHHHLLL
Query KKKGLPWTISKGFDTFXPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLXLH  173
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct KKKGLPWTISKGFDTFXPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLXLH  180
DSSP  HHHLLLLHHHHHLLLLEELLLLEEHHHHHHHLLLLLLLEEEEEEELLEEEEEEEHHHLLL


DSSP  LHHHHHHHHLLLLLLLLLLEEELLLLLLLLEELLLLEEEEEEEELLEEEEEEEEEEEELL
Query PLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDXNFECENRP  233
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct PLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDXNFECENRP  240
DSSP  LHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEELLEEEEEEEEEEEELL


DSSP  LLLLLLL
Query GPYEFRE  240
ident |||||||
Sbjct GPYEFRE  247
DSSP  LLLLLLL


No 2: 2DFUA  MOLECULE: PROBABLE 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE               

DSSP  ..LLLH.....................................HHHLLLEEEELLLLL.l
Query ..SYNY.....................................LKAARKIICIGRNYA.a   20
ident                                                 || | ||||   
Sbjct mkILRFnegrwgvlegelvletdgpggnptgrrydlasvtllpPATPTKIVCVGRNYRlp   60
DSSP  leEEEEllleeeeeelleeeeelllllleeeeeeehhhlleelLLLLLLEEEELLLLLll


DSSP  lLLLEEEELHHHEELLLLLlllllllllllllllLLLEEELLLL.LEELLEEEEEEELLL
Query hQPFFFLKPTSSIVTPLSSpanstfnglnedgtnPGPIFIPRGV.KVHHEIELALIVSKH   79
ident   |  |||       |                    |   |      | | |||  |   
Sbjct kEPGLFLKGPNALARPGNP.........rdpwgtAEPVPYPFFTeELHYEGELAVVVGDR  111
DSSP  lLLLEEEELHHHEELLLLL.........llhhhhLLLEEELLLLlLEELLEEEEEEELLL


DSSP  LLLlLLLLhhHLHHHEEEEEEEELLEEHHHHHHHhhhlLLLHHHHHLLLLEELL.LLEEH
Query LSNvTKXKpeEVYDSISGVALALDLTARNVQDEAkkkgLPWTISKGFDTFXPIS.AIVSR  138
ident              |   |   | | ||| ||       | |   |  | | |        
Sbjct MRH.VPPE..KALDHVLGYTVAVDITARDVQKKD....LQWVRAKSADKFLPLGpWLETD  164
DSSP  LLL.LLHH..HHHHHEEEEEEEELLEEHHHHHHL....LLLHHHHLLLLLEEEEeEEELL


DSSP  hhlhhhlllLLLLEEEEEEELLEEEEEEEHHHLLLLHHHHHHHHLLLLLLLLLLEEELLL
Query ekfssyksnLQDIFRVKCSVNGQLRQDGGTNLXLHPLHKILQHISTXISLEPGDIILTGT  198
ident                |   ||| ||| | |         ||  |||   ||| |  ||||
Sbjct ........lNPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTLEPLDVVLTGT  216
DSSP  ........lLLLLLEEEEEELLEEEEEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEELLL


DSSP  LLLLLEELLLLEEEEEEEElleeEEEEEEEEEELLLLLllll
Query PAGVGELKPGDRVHCELLQnndnIVDXNFECENRPGPYefre  240
ident | ||| | ||||                              
Sbjct PEGVGALRPGDRLEVAVEG....VGTLFTLIGPKEERP...w  251
DSSP  LLLLLLLLLLLEEEEEELL....LEEEEEEEEEELLLL...l


No 3: 1NR9A  MOLECULE: PROTEIN YCGM;                                              

DSSP  .........LLLHHHHLLLEEEELLLLLLLLLLEEEELHHHEELLLllllllllllllll
Query .........SYNYLKAARKIICIGRNYAAHQPFFFLKPTSSIVTPLsspanstfnglned   51
ident                   |  | | |||   |  | ||                      
Sbjct hxyqhhnwqGALLDYPVSKVVCVGSNYAPEEPVLFIKPETALCDLR..............   46
DSSP  lllllllllLLLLLLLLLLEEEELLLLLLLLLLEEEELHHHEEELL..............


DSSP  llllLLEEELLL.LLEELLEEEEEEELLLLLLlLLLLhhHLHHHEEEEEEEELLEEHHHH
Query gtnpGPIFIPRG.VKVHHEIELALIVSKHLSNvTKXKpeEVYDSISGVALALDLTARNVQ  110
ident      |  ||     |||| |||      |          |   | |   ||||| | ||
Sbjct ....QPLAIPSDfGSVHHEVELAVLIGATLRQ.ATEE..HVRKAIAGYGVALDLTLRDVQ   99
DSSP  ....LLLLLLLLlLLEEELEEEEEEELLLLLL.LLHH..HHHHHEEEEEEEELLLLHHHH


DSSP  HHHHHHLLLLHHHHHLLLLEELLLLEEHHHLHhhllLLLLlEEEEEEELLEEEEEEEHHH
Query DEAKKKGLPWTISKGFDTFXPISAIVSREKFSsyksNLQDiFRVKCSVNGQLRQDGGTNL  170
ident    || | ||   | ||   | |       |       |       ||||  || | |  
Sbjct GKXKKAGQPWEKAKAFDNSCPLSGFIPAAEFT...gDPQN.TTLSLSVNGEQRQQGTTAD  155
DSSP  HHHHHHLLLLHHHHLLLLLEEELLLEEHHHLL...lLHHH.LEEEEEELLEEEEEEEHHH


DSSP  LLLLHHHHHHHHLLLLLLLLLLEEELLLLLLLLEELLLLEEEEEEEelleeEEEEEEEEE
Query XLHPLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLqnndnIVDXNFECE  230
ident | |         |    |  ||  ||||| ||| |  ||                     
Sbjct XIHKIVPLIAYXSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFD.....GHSLTTRVL  210
DSSP  LLLLHHHHHHHHLLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEL.....LEEEEEELL


DSSP  Elllllllll
Query Nrpgpyefre  240
ident           
Sbjct G.........  211
DSSP  L.........


No 4: 1GTTA  MOLECULE: 4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL            

DSSP  lllhhhhLLLEEEELLLLLL..................lLLLEEEELHHHEELLLlllll
Query synylkaARKIICIGRNYAA..................hQPFFFLKPTSSIVTPLsspan   42
ident           |     |                          | ||             
Sbjct ......mKGTIFAVALNHRSqldawqeafqqspykappkTAVWFIKPRNTVIGCG.....   49
DSSP  ......lLLLEEEEELLLHHhhhhhllhhhlllllllllLLEEEEELHHHEELLL.....


DSSP  lllllllllllllLLEEELLLLLEELLEEEEEEELLLLLLLLLLlhhHLHHHEEEEEEEE
Query stfnglnedgtnpGPIFIPRGVKVHHEIELALIVSKHLSNVTKXkpeEVYDSISGVALAL  102
ident               ||  | | ||      |||| |    |           | | ||| 
Sbjct .............EPIPFPQGEKVLSGATVALIVGKTATKVREE...DAAEYIAGYALAN   93
DSSP  .............LLEEELLLLLEELLEEEEEEELLLLLLLLHH...HHHHHEEEEEEEE


DSSP  LLEEHhhHHHHHhhlLLLHHHHHLLLLEELLLLEEHhhlhhhllLLLLLEEEEEEELLEE
Query DLTARnvQDEAKkkgLPWTISKGFDTFXPISAIVSRekfssyksNLQDIFRVKCSVNGQL  162
ident |               |    |  | | ||   |             |        ||  
Sbjct DVSLP..EESFY...RPAIKAKCRDGFCPIGETVAL........SNVDNLTIYTEINGRP  140
DSSP  LLLLL..LLLLL...LLLHHHHLLLLLEELLLLLLL........LLLLLLEEEEEELLEE


DSSP  EEEEEHHHLLLLHHHHHHHHLLLLLLLLLLEEELLLLLLLLEELLLLEEEEEEEelleEE
Query RQDGGTNLXLHPLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLqnndNI  222
ident      |          |   |    | ||| || |||    |  |||||           
Sbjct ADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQPGDRVRVLAE....GF  196
DSSP  EEEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEELLLLLLLLEELLLLEEEEEEL....LL


DSSP  EEEEEEEEELLL................................................
Query VDXNFECENRPG................................................  234
ident                                                             
Sbjct PPLENPVVDEREvttrksfptlphphgtlfalglnyadhpeeplvflkapntltgdnqts  256
DSSP  LLEEEEEEEHHHlllllllllllllllleeeelllllllllllleeeelhhheellleee


DSSP  ............................................................
Query ............................................................  234
ident                                                             
Sbjct vrpnnieymhyeaelvvvigkqarnvseadamdyvagytvcndyairdylenyyrpnlrv  316
DSSP  eelllllleelleeeeeeelllllllllllhhhheeeeeeeelleehhhllllllllhhh


DSSP  ............................................................
Query ............................................................  234
ident                                                             
Sbjct ksrdgltpmlstivpkeaipdphnltlrtfvngelrqqgttadlifsvpfliaylsefmt  376
DSSP  hllllleellllleehhhllllllleeeeeelleeeeeeehhhllllhhhhhhhhhllll


DSSP  .......................................llllll
Query .......................................pyefre  240
ident                                              
Sbjct lnpgdmiatgtpkglsdvvpgdevvvevegvgrlvnrivseetak  421
DSSP  llllleeelllllllllllllleeeeeellleeeeeeeeehhhhl


No 5: 1QCOA  MOLECULE: FUMARYLACETOACETATE HYDROLASE;                             

DSSP  ..................LLLH......................................
Query ..................SYNY......................................    4
ident                                                             
Sbjct msfipvaedsdfpiqnlpYGVFstqsnpkprigvaigdqildlsvikhlftgpalskhqh   60
DSSP  llllllllllllllllllEEEEellllllleeeeeelleeeellllhhhlllllllllhh


DSSP  .........................................................HHH
Query .........................................................LKA    7
ident                                                             
Sbjct vfdettlnnfmglgqaawkearaslqnllsasqarlrddkelrqraftsqasatmhlPAT  120
DSSP  hhhllllhhhhhllhhhhhhhhhhhhhhhlllllhhhhlhhhhhhheeehhhleeelLLL


DSSP  LLLEEEELlLLLL.....................lLLLEEEELHHHEELLLlllllllll
Query ARKIICIGrNYAA.....................hQPFFFLKPTSSIVTPLsspanstfn   46
ident                                     |       ||||            
Sbjct IGDYTDFY.SSRQhatnvgimfrgkenallpnwlhLPVGYHGRASSIVVSG.........  170
DSSP  LLLEEEEL.LLHHhhhhhhhhhllhhhllllllllLLLEEELLLLLEEELL.........


DSSP  lllllllllLLEEELL...............LLLEELLEEEEEEELLLLL...LLLLLlh
Query glnedgtnpGPIFIPR...............GVKVHHEIELALIVSKHLS...NVTKXkp   88
ident           ||  |                      | | |  |               
Sbjct .........TPIRRPMgqmrpdnskppvygaCRLLDMELEMAFFVGPGNRfgePIPIS..  219
DSSP  .........LLEELLEeeelllllllleeeeLLLEELLEEEEEEELLLLLlllLLLHH..


DSSP  hHLHHHEEEEEEEELLEEHHHHHHHHhHLLLLHHHHHLllLEELL.LLEEHHHLHHH...
Query eEVYDSISGVALALDLTARNVQDEAKkKGLPWTISKGFdtFXPIS.AIVSREKFSSY...  144
ident       | |  |  |  ||  |       |     | |     ||   |           
Sbjct .KAHEHIFGMVLMNDWSARDIQQWEY.VPLGPFLGKSF..GTTISpWVVPMDALMPFvvp  275
DSSP  .HHHHHEEEEEEEELLEEHHHHHHHL.LLLLLLHHHHL..LEEELlLLEEHHHHHHHeel


DSSP  ..............lLLLLLLEEEEEEEL......LEEEEEEEHHHLLLLHHHHHHHHLL
Query ..............kSNLQDIFRVKCSVN......GQLRQDGGTNLXLHPLHKILQHIST  184
ident                           |                           | | | 
Sbjct npkqdpkplpylchsQPYTFDINLSVSLKgegmsqAATICRSNFKHMYWTMLQQLTHHSV  335
DSSP  lllllllllhhhlllLLLEELLEEEEEEEllllllLEEEEEEEHHHLLLLHHHHHHHHHL


DSSP  L.LLLLLLLEEELLLL.......LLLL....................EELLLLEEEEEEE
Query X.ISLEPGDIILTGTP.......AGVG....................ELKPGDRVHCELL  216
ident     | |||    ||         |                       |  || |     
Sbjct NgCNLRPGDLLASGTIsgsdpesFGSMlelswkgtkaidvgqgqtrtFLLDGDEVIITGH  395
DSSP  LlLLLLLLLEEELLLLllllhhhLLLHhhhllllllleellllleelLLLLLLEEEEEEE


DSSP  EL...lEEEEEE.EEEEEELLlllllll
Query QN...nDNIVDX.NFECENRPgpyefre  240
ident                             
Sbjct CQgdgyRVGFGQcAGKVLPAL.......  416
DSSP  EEllllEEELLLeEEEEELLL.......


No 6: 1SV6A  MOLECULE: 2-KETO-4-PENTENOATE HYDRATASE;                             

DSSP  ...............................................lllhhhhlLLEEE
Query ...............................................synylkaaRKIIC   13
ident                                                             
Sbjct mtkhtleqlaadlrraaeqgeaiaplrdligidnaeaayaiqhinvqhdvaqgrrVVGRK   60
DSSP  llllhhhhhhhhhhhhhhhlllllllhhhhllllhhhhhhhhhhhhhhhhlllllEEEEE


DSSP  ELLLLLL.......lLLLEEEELHHHEELLLllllllllllllllllllLLEEELLLLLE
Query IGRNYAA.......hQPFFFLKPTSSIVTPLsspanstfnglnedgtnpGPIFIPRGVKV   66
ident  |             || |                                |   |    
Sbjct VGLTHPKvqqqlgvdQPDFGTLFADMCYGDN..................EIIPFSRVLQP  102
DSSP  EELLLHHhhhlllllLLEEEEEEHHHEEELL..................EEELLLLLLLL


DSSP  ELLEEEEEEELLLLLLLlLLLHHHLHHHEEEEEEEELLEEHHH.hHHHHhHLLL..LHHH
Query HHEIELALIVSKHLSNVtKXKPEEVYDSISGVALALDLTARNV.qDEAKkKGLP..WTIS  123
ident   | | ||     |         | |  |  |  ||                       |
Sbjct RIEAEIALVLNRDLPAT.DITFDELYNAIEWVLPALEVVGSRIrdWSIQ.FVDTvaDNAS  160
DSSP  EEEEEEEEEELLLLLLL.LLLHHHHHLLEEEEEEEEEEELLLLllLLLL.HHHHhhLHHH


DSSP  HHlllLEELL.LLEEHHHLhhhlllLLLLEEEEEEELLEEEEEEEHHHLLLL....HHHH
Query KGfdtFXPIS.AIVSREKFssyksnLQDIFRVKCSVNGQLRQDGGTNLXLHP....LHKI  178
ident  |      |                       |   |      |     |          
Sbjct CG...VYVIGgPAQRPAGL......DLKNCAMKMTRNNEEVSSGRGSECLGHplnaAVWL  211
DSSP  EE...EEEELlLLLLLLLL......LLLLLEEEEEELLEEEEEEEHHHLLLLhhhhHHHH


DSSP  HHHHLLL.LLLLLLLEEELLLLLLLLEELLLLEEEEEEEElleeEEEEEEEEEEllllll
Query LQHISTX.ISLEPGDIILTGTPAGVGELKPGDRVHCELLQnndnIVDXNFECENrpgpye  237
ident           |  |||||||          |||           |               
Sbjct ARKMASLgEPLRTGDIILTGALGPMVAVNAGDRFEAHIEG....IGSVAATFSS......  261
DSSP  HHHHHHLlLLLLLLLEEEEEELLLLEELLLLLEEEEEELL....LEEEEEEELL......


DSSP  lll
Query fre  240
ident    
Sbjct ...  261
DSSP  ...


No 7: 2EB4A  MOLECULE: 2-OXO-HEPT-3-ENE-1,7-DIOATE HYDRATASE;                     

DSSP  ................................................lllhhhhlLLEE
Query ................................................synylkaaRKII   12
ident                                                          |  
Sbjct mfdkhthtliaqrldqaekqreqiraisldypeitiedayavqrewvrlkiaegrtLKGH   60
DSSP  lllhhhhhhhhhhhhhhhhhllllllhhhhlllllhhhhhhhhhhhhhhhhhllllEEEE


DSSP  EELLLLL.......llLLLEEEELHHHEELLLllllllllllllllllllLLEEELLLLL
Query CIGRNYA.......ahQPFFFLKPTSSIVTPLsspanstfnglnedgtnpGPIFIPRGVK   65
ident  ||              |                                  |   |   
Sbjct KIGLTSKamqassqisEPDYGALLDDMFFHDG..................SDIPTDRFIV  102
DSSP  EEELHHHhhlllllllLLEEEEEEHHHEELLL..................EEELHHHLLL


DSSP  EELLEEEEEEELLLLLLLLLLlHHHLHHHEEEEEEEELLEEhhHHHH.hhHHLLL...LH
Query VHHEIELALIVSKHLSNVTKXkPEEVYDSISGVALALDLTArnVQDE.akKKGLP...WT  121
ident    | |||    | |          ||     |  || |            |        
Sbjct PRIEVELAFVLAKPLRGPNCT.LFDVYNATDYVIPALELID..ARCHnipRKVFDtisDN  159
DSSP  LEEEEEEEEEELLLLLLLLLL.HHHHHHHEEEEEEEEEEEL..LLLLlllLHHHHhhhLH


DSSP  HHHHlllLEELL.LLEEHHHLhhhlllLLLLEEEEEEELLEEEEEEEHHHLLLLHHHHHH
Query ISKGfdtFXPIS.AIVSREKFssyksnLQDIFRVKCSVNGQLRQDGGTNLXLHPLHKILQ  180
ident                                       ||     |     |        
Sbjct AANA...GVILGgRPIKPDEL......DLRWISALMYRNGVIEETGVAAGVLNHPANGVA  210
DSSP  HHEE...EEEELlLLLLLLLL......LHHHLEEEEEELLEEEEEEEHHHLLLLLLHHHH


DSSP  HHLLLL.....LLLLLLEEELLLLLLLLEELLLLEEEEEEEelleEEEEEEEEEEellll
Query HISTXI.....SLEPGDIILTGTPAGVGELKPGDRVHCELLqnndNIVDXNFECEnrpgp  235
ident             || | ||| |          ||  |        |              
Sbjct WLANKLapydvQLEAGQIILGGSFTRPVPARKGDTFHVDYG....NMGSISCRFV.....  261
DSSP  HHHHHHhhhllLLLLLLEEELLLLLLLEELLLLLEEEEELH....HHLEEEEEEL.....


DSSP  lllll
Query yefre  240
ident      
Sbjct .....  261
DSSP  .....


No 8: 1I8LA  MOLECULE: T LYMPHOCYTE ACTIVATION ANTIGEN CD80;                      

DSSP  lllhhhhllleeeelllllllllleeeelhhheelllllllllllllllllllllLLEEE
Query synylkaarkiicigrnyaahqpffflkptssivtplsspanstfnglnedgtnpGPIFI   60
ident                                                             
Sbjct ......................................................vIHVTK    6
DSSP  ......................................................lEEEEE


DSSP  LLLLLeelleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhhhhhllll
Query PRGVKvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkkglpw  120
ident                                                             
Sbjct EVKEV.......................................................   11
DSSP  ELLLL.......................................................


DSSP  hhhhhlllLEEL.LLLEehhhlhhhllLLLLLEEEEEEELLEEEEEEEHHHllllhhhhh
Query tiskgfdtFXPI.SAIVsrekfssyksNLQDIFRVKCSVNGQLRQDGGTNLxlhplhkil  179
ident                 |                |                          
Sbjct ........ATLScGHNV........svEELAQTRIYWQKEKKMVLTMMSGD.........   46
DSSP  ........EEELlLLLL........lhHHHLLEEEEEEELLEEEEEEELLE.........


DSSP  hhhlllllllllleeellLLLLLL....................eeLLLLEEEEEEEEL.
Query qhistxislepgdiiltgTPAGVG....................elKPGDRVHCELLQN.  218
ident                                                      |  |   
Sbjct ..................MNIWPEyknrtifditnnlsivilalrpSDEGTYECVVLKYe   88
DSSP  ..................EEELLLlllleeeellllleeeellllhHHLEEEEEEEEEEe


DSSP  ...LEEEEEEEEEEEELLLL........................................
Query ...NDNIVDXNFECENRPGP........................................  235
ident                                                             
Sbjct kdaFKREHLAEVTLSVKADFptpsisdfeiptsnirriicstsggfpephlswlengeel  148
DSSP  lleEEEEEEEEEEEEEELLLllleeeeeellllleeeeeeeeeeellleeeeeellllll


DSSP  ..............................................lllll
Query ..............................................yefre  240
ident                                                    
Sbjct nainttvsqdpetelyavsskldfnmttnhsfmclikyghlrvnqtfnwnt  199
DSSP  lllleeeeelllllleeeeeeeeeellllleeeeeeeelleeelleeelll


No 9: 2PN5A  MOLECULE: THIOESTER-CONTAINING PROTEIN I;                            

DSSP  ...............................................lllhhhhllleee
Query ...............................................synylkaarkiic   13
ident                                                             
Sbjct llvvgpkfiranqeytlvisnfnsqlskvdlllklelsvlnvtkmvdvrrnmnrminfnm   60
DSSP  leeeeeleelllleeeeeeeelllllleeeeeeeelllllleeeeeeeelleeeeeeeel


DSSP  elllllllllleeeelhhheelllllllllllllllllllllLLEEEllllLEELLEEEE
Query igrnyaahqpffflkptssivtplsspanstfnglnedgtnpGPIFIprgvKVHHEIELA   73
ident                                                             
Sbjct pedltagnykitidgqrgfsfhkeaelvylsksisgliqvdkPVFKP....GDTVNFRVI  116
DSSP  lllllllleeeeeeeellllleeeeeeeelllleeeeeeellLEELL....LLEEEEEEE


DSSP  eeelllllllllllhhhlhhheeeeeeeelleehhhhhhhhhhllllhhhhhlllleell
Query livskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkkglpwtiskgfdtfxpis  133
ident                                                             
Sbjct ............................................................  116
DSSP  ............................................................


DSSP  lleEHHHlHHHLlLLLLlEEEEEEEL.LEEEEEEEHhhllllhhhhhhhhllllllllll
Query aivSREKfSSYKsNLQDiFRVKCSVN.GQLRQDGGTnlxlhplhkilqhistxislepgd  192
ident                     |              |                        
Sbjct ..vLDTElKPPA.RVKS.VYVTIRDPqRNVIRKWST....................akly  152
DSSP  ..eEELLlLLLL.LLLE.EEEEEELLlLLEEEEEEE....................eell


DSSP  eeELLLlllLLEE..LLLLEEEEEEEELLEEEEEEEEEEEELL.................
Query iiLTGTpagVGEL..KPGDRVHCELLQNNDNIVDXNFECENRP.................  233
ident                                 |   ||                      
Sbjct agVFES..dLQIAptPMLGVWNISVEVEGEELVSKTFEVKEYVlstfdvqvmpsviplee  210
DSSP  llEEEE..eEELLllLLLEEEEEEEEELLEEEEEEEEEELLLLllleeeeeeelllllhh


DSSP  ..........LLLL..............................................
Query ..........GPYE..............................................  237
ident                                                             
Sbjct hqavnltieaNYHFgkpvqgvakvelyldddklklkkeltvygkgqvelrfdnfamdadq  270
DSSP  hleeeeeeeeEELLlllleeeeeeeeeelllleeeeeeeeeeleeeeeeellllllllle


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct qdvpvkvsfveqytnrtvvkqsqitvyryayrvelikespqfrpglpfkcalqfthhdgt  330
DSSP  eeeeeeeeeeellllleeeeeeeeeeelllleeeeeelllllllllleeeeeeeelllll


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct pakgisgkvevsdvrfettttsdndgliklelqpsegteqlsihfnavdgfffyedvnkv  390
DSSP  llllleeeeeehhhleeeeeellllleeeeeellllllleeeeeeellllleeeeeeell


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct etvtdayiklelkspikrnklmrfmvtctermtffvyyvmskgniidagfmrpnkqpkyl  450
DSSP  llllllleeeeelllllllleeeeeeeeeeeelleeeeeelllleeeeeeelllleeeee


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct lqlnatekmiprakiliatvagrtvvydfadlafqelrnnfdlsideqeikpgrqielsm  510
DSSP  eeeellhhhlleeeeeeeeeelleeeeeeeeeelhhhlllleeeellllllllleeeeee


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct sgrpgayvglaaydkalllfnknhdlfwedigqvfdgfhenefdifhslglfartlddil  570
DSSP  ellllleeeeeeeehhhhhhllllllhhhhhhhhhlllllllllhhhhhleeeeelllle


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct fdsqeswlwknvsigrsgsrklievvpdtttswyltgfsidpvyglgiikkpiqfttvqp  630
DSSP  ellllllllleeellllleeeeeeellllleeeeeeeeeeellleeeelllleeeeelll


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct fyivenlpysikrgeavvlqftlfnnlgaeyiadvtlynvanqtefvgrpntdlsytksv  690
DSSP  eeeeeellleeellleeeeeeeeeellllleeeeeeeelhhhleeelllllllleeeeee


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct svppkvgvpisflikarklgemavrvkasimlghetdalekvirvmpeslvqprmdtrff  750
DSSP  eellllleeeeeeeeellleeeeeeeeeelllllleeeeeeeeeeellllllleeeeeee


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct cfddhknqtfpinldinkkadsgstkiefrlnpnllttviknldhllgvptgcgeqnmvk  810
DSSP  eeeeeeeeeeeeelllllllllllleeeeeeellllhhhhhllllllllllllllhhhhh


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct fvpnilvldylhaigskeqhlidkatnllrqgyqnqmryrqtdgsfglwettngsvflta  870
DSSP  lhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhhhhllllllllllllllllhhhhh


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct fvgtsmqtavkyisdidaamvekaldwlaskqhfsgrfdkagaeyhkemqgglrngvalt  930
DSSP  hhhhhhhhhllllllllhhhhhhhhhhhhhllllllllllllllllhhhhllllllhhhh


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct syvlmallendiakakhaeviqkgmtylsnqfgsinnaydlsiatyammlnghtmkeeal  990
DSSP  hhhhhhhhllhhhhhhlhhhhhhhhhhhhhhhhhlllhhhhhhhhhhhhhhllllhhhhh


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct nklidmsfidadknerfwnttnpiettayallsfvmaekytdgipvmnwlvnqryvtgsf 1050
DSSP  hhhhhlleeelllleeelllllhhhhhhhhhhhhhhlllhhhhhhhhhhhhlllllllll


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct pstqdtfvglkaltkmaekispsrndytvqlkykksakyfkinseqidvenfvdipedtk 1110
DSSP  llhhhhhhhhhhhhhhhhhhllllleeeeeeeelleeeeeeelllllllllleellllll


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct kleinvggigfgllevvyqfnlnlvnfenrfqldlekqntgsdyelrlkvcasyipqltd 1170
DSSP  eeeeeeeeeeeeeeeeeeellllllleeeleeeeeeeelllllleeeeeeeeeellllll


DSSP  ............................................................
Query ............................................................  237
ident                                                             
Sbjct rrsnmalievtlpsgyvvdrnpiseqtkvnpiqkteiryggtsvvlyydnmgserncftl 1230
DSSP  llllleeeeeelllleeeeeeeeellllllllleeeeelllleeeeeellllllleeeee


DSSP  ..................................................lll
Query ..................................................fre  240
ident                                                      
Sbjct tayrrfkvalkrpayvvvydyyntnlnaikvyevdkqnlceicdeedcpaecg 1283
DSSP  eeeellleelllleeeeeeelleeeeeeeeeellllllhhhhlllllllllll


No 10: 2ICCA  MOLECULE: V-SET AND IMMUNOGLOBULIN DOMAIN-CONTAINING                 

DSSP  lllhhhhllleeeelllllllllleeeelhhheeLLLLllllllllllllllllllLEEE
Query synylkaarkiicigrnyaahqpffflkptssivTPLSspanstfnglnedgtnpgPIFI   60
ident                                                             
Sbjct .............................grpilEVPE..................SVTG   13
DSSP  .............................lllllLLLL..................EEEE


DSSP  LLLLLeelleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhhhhhllll
Query PRGVKvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkkglpw  120
ident |                                                           
Sbjct PWKGD.......................................................   18
DSSP  ELLLL.......................................................


DSSP  hhhhhlllLEELLLLEEHHHLhhhlllllllEEEEEEEL....LEEEEEEEHHHllllhh
Query tiskgfdtFXPISAIVSREKFssyksnlqdiFRVKCSVN....GQLRQDGGTNLxlhplh  176
ident           |                      ||  |                      
Sbjct .......vNLPCTYDPLQGYT.........qVLVKWLVQrgsdPVTIFLRDSSG......   56
DSSP  .......eEELLLLLLLLLLE.........eEEEEEEELllllLEEEEEEELLE......


DSSP  hhhhhhlllllllllleeelllLLLLL........................eeLLLLEEE
Query kilqhistxislepgdiiltgtPAGVG........................elKPGDRVH  212
ident                                                             
Sbjct ......................DHIQQakyqgrlhvshkvpgdvslqlstlemDDRSHYT   94
DSSP  ......................EEELLhhhllleeellllllllleeellllhHHLEEEE


DSSP  EEEEEL....lEEEEEEEEEEEELLlllllll
Query CELLQN....nDNIVDXNFECENRPgpyefre  240
ident ||             |   |            
Sbjct CEVTWQtpdgnQVVRDKITELRVQK.......  119
DSSP  EEEEEElllllEEEEEEEEEEEEEL.......


No 11: 1CN4A  MOLECULE: PROTEIN (ERYTHROPOIETIN RECEPTOR);                         

DSSP  lllhhhhllleeeellllllllLLEE...EELHhheelllllllllllllllllllllll
Query synylkaarkiicigrnyaahqPFFF...LKPTssivtplsspanstfnglnedgtnpgp   57
ident                       |                                     
Sbjct ......................PDPKfesKAAL...........................   11
DSSP  ......................LLHHhhhHHHH...........................


DSSP  eeellllleelleeeeeeelllllllllllhhhlhhheeeEEEEELLEEHhhhhhhhhhl
Query ifiprgvkvhheielalivskhlsnvtkxkpeevydsisgVALALDLTARnvqdeakkkg  117
ident                                           |                 
Sbjct ..................................laargpEELLCFTERL..........   27
DSSP  ..................................hhllllLLLEEELLLL..........


DSSP  lllhhhhhlllleelllleehhhlhhHLLLLL.LLEEEEEEEL.LEEEEEEEhhHLLLlh
Query lpwtiskgfdtfxpisaivsrekfssYKSNLQ.DIFRVKCSVN.GQLRQDGGtnLXLHpl  175
ident                                                             
Sbjct ................edlvcfweeaASAGVGpGQYSFSYQLEdEPWKLCRL..HQAP..   67
DSSP  ................llleeeeeelLLLLLLlLLEEEEEEELlLLLEEELL..EEEE..


DSSP  hhHHHHhlllllllllleeeLLLLLLL..LEELlLLEEEEEEEEL.LEEEEEEEEE....
Query hkILQHistxislepgdiilTGTPAGV..GELKpGDRVHCELLQN.NDNIVDXNFE....  228
ident                                                             
Sbjct ..TARG............avRFWCSLPtaDTSS.FVPLELRVTAAsGAPRYHRVIHinev  112
DSSP  ..LLLL............leEEEEELLhhHLLL.LLLEEEEEEELlLLLLLEEEELllll


DSSP  ............................................................
Query ............................................................  228
ident                                                             
Sbjct vlldapvglvarladesghvvlrwlpppetpmtshiryevdvsagqgagsvqrveilegr  172
DSSP  eelllleeeelllllllllleeeeelllllllhhheeeeeeeellllllleeeeeellll


DSSP  ...................eeELLL..............llllll
Query ...................ceNRPG..............pyefre  240
ident                                              
Sbjct tecvlsnlrgrtrytfavrarMAEPsfggfwsewsepvslltpsd  217
DSSP  leeelllllllleeeeeeeeeELLLllleellllllleeeellll


No 12: 2IF7A  MOLECULE: SLAM FAMILY MEMBER 6;                                      

DSSP  lllhhhhllleeeelllllllllleeeelhhheelllllllllllllllllllllLLEEE
Query synylkaarkiicigrnyaahqpffflkptssivtplsspanstfnglnedgtnpGPIFI   60
ident                                                             
Sbjct ....................................................ltpLMVNG    8
DSSP  ....................................................lllEEEEE


DSSP  Llllleelleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhhhhhllll
Query Prgvkvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkkglpw  120
ident                                                             
Sbjct I...........................................................    9
DSSP  E...........................................................


DSSP  hhhhhlLLLEEL.LLLEEhhhlhhhlllllllEEEEEEELLEEEEEEEHhhLLLLHhhhh
Query tiskgfDTFXPI.SAIVSrekfssyksnlqdiFRVKCSVNGQLRQDGGTnlXLHPLhkil  179
ident                                        |                    
Sbjct ....lgESVTLPlEFPAG...........ekvNFITWLFNETSLAFIVP..HETKS....   48
DSSP  ....llLLEEELlLLLLL...........lllLEEEEEELLEEEEEEEL..LLLLL....


DSSP  hhhlllllllllleeelLLLLLLL....................eeLLLLEEEEEEEELL
Query qhistxislepgdiiltGTPAGVG....................elKPGDRVHCELLQNN  219
ident                                                             
Sbjct .................PEIHVTNpkqgkrlnftqsyslqlsnlkmEDTGSYRAQISTKT   91
DSSP  .................LEEEELLhhhhlleeellllleeellllhHHLEEEEEEEELLL


DSSP  EEeEEEEEEEEELLLLL...........................................
Query DNiVDXNFECENRPGPY...........................................  236
ident                                                             
Sbjct SA.KLSSYTLRILRQLRniqvtnhsqnmtcelhltcsvedaddnvsfrwealgntlssqp  150
DSSP  LE.EEEEEEEEEELLLEeeeeeelllllleeeeeeeeeelllllleeeeeelleeeelll


DSSP  ........................LLLL..........
Query ........................EFRE..........  240
ident                                       
Sbjct nltvswdprisseqdytciaenavSNLSfsvsaqklce  188
DSSP  eeeeeelllllllleeeeeeeellEEEEeeeehhhhll


No 13: 2DRUA  MOLECULE: CHIMERA OF CD48 ANTIGEN AND T-CELL SURFACE                 

DSSP  lllhhhhllleeeelllllllllleeeelhhheelllllllllllllllllllllLLEEE
Query synylkaarkiicigrnyaahqpffflkptssivtplsspanstfnglnedgtnpGPIFI   60
ident                                                             
Sbjct .................................................fqdqsvPNVNA   11
DSSP  .................................................llllllLEEEE


DSSP  LLLLLeelleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhhhhhllll
Query PRGVKvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkkglpw  120
ident   |                                                         
Sbjct ITGSN.......................................................   16
DSSP  ELLLL.......................................................


DSSP  hhhhhlllLEEL.LLLEehhhlhhhllllllLEEEEEEELL.EEEEEEEHHHLlllhhhh
Query tiskgfdtFXPI.SAIVsrekfssyksnlqdIFRVKCSVNG.QLRQDGGTNLXlhplhki  178
ident                                  |        |       |         
Sbjct ........VTLTiLKHP...........lasYQRLTWLHTTnQKILEYFPNGK.......   50
DSSP  ........EEELlLLLL...........lllLLEEEEELLLlLEEEEELLLLL.......


DSSP  hhhhlllllllllleeellLLLLLLE....................eLLLLEEEEEEEEl
Query lqhistxislepgdiiltgTPAGVGE....................lKPGDRVHCELLQn  218
ident                                                          |  
Sbjct ...................KTVFESVfkdrvdldktngalriynvskEDRGDYYMRMLH.   90
DSSP  ...................EEELLLLlllleeelllllleeellllhHHLEEEEEEEEL.


DSSP  LEEEeEEEEEEEELLLL...........................................
Query NDNIvDXNFECENRPGP...........................................  235
ident            |                                                
Sbjct ETED.QWKITMEVYEMVskpmiywecsnatltcevlegtdvelklyqgkehlrslrqktm  149
DSSP  LLEE.EEEEEEEEELLLllleeeeehhhleeeeellllllleeeeeelleeeeeelllee


DSSP  ..........................lllll
Query ..........................yefre  240
ident                                
Sbjct syqwtnlrapfkckavnrvsqesemevvncp  180
DSSP  eeellllllleeeeeeelleeeeeeelllll


No 14: 1GSMA  MOLECULE: MUCOSAL ADDRESSIN CELL ADHESION MOLECULE-1;                

DSSP  lllhhhhllleeeelllllllllleeeelhhheELLLlllllllllllllllllllLEEE
Query synylkaarkiicigrnyaahqpffflkptssiVTPLsspanstfnglnedgtnpgPIFI   60
ident                                                             
Sbjct ..........................vkplqvePPEP...................VVAV   15
DSSP  ..........................llleeeeLLLL...................EEEE


DSSP  LLLLLEELLEEEEeeelllllllllllhhhlhhheeeeeeeelleehhhhhhhhhhllll
Query PRGVKVHHEIELAlivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkkglpw  120
ident   |        ||                                               
Sbjct ALGASRQLTCRLA...............................................   28
DSSP  ELLLLEEEEEEEL...............................................


DSSP  hhhhhlllleelllleehhhlhhhlllLLLLEEEEEEELLE..eEEEEEHhhllllhhhh
Query tiskgfdtfxpisaivsrekfssyksnLQDIFRVKCSVNGQ..lRQDGGTnlxlhplhki  178
ident                                  |               |          
Sbjct ..........................cADRGASVQWRGLDTslgAVQSDT..........   52
DSSP  ..........................lLLLLLEEEEELLLLlllLEEEEL..........


DSSP  hhhhlllllllllleeelllllllleeLLLLEEEEEEEELLEEeEEEEEEEEELLLL...
Query lqhistxislepgdiiltgtpagvgelKPGDRVHCELLQNNDNiVDXNFECENRPGP...  235
ident                                   |                     |   
Sbjct ...............grsvltvrnaslSAAGTRVCVGSCGGRT.FQHTVQLLVYAFPnql   96
DSSP  ...............leeeeeellllhHHLEEEEEEEEELLEE.EEEEEEEEEELLLlee


DSSP  ............................................................
Query ............................................................  235
ident                                                             
Sbjct tvspaalvpgdpevactahkvtpvdpnalsfsllvggqelegaqalgpevqeeeeepqgd  156
DSSP  eeellllllllleeeeeeeeellllllleeeeeeelleelllleellleeeellllllll


DSSP  .............................................lllll
Query .............................................yefre  240
ident                                                   
Sbjct edvlfrvterwrlpplgtpvppalycqatmrlpglelshrqaipvliegr  206
DSSP  lllleeeeeeeelllllllllleeeeeeeeeelleeeeeeeeeellllll


No 15: 2CH8A  MOLECULE: 33 KDA EARLY PROTEIN;                                      

DSSP  lllhhhhllleeeelllllllllleeeelhhheelllllllllllllllllllllllEEE
Query synylkaarkiicigrnyaahqpffflkptssivtplsspanstfnglnedgtnpgpIFI   60
ident                                                             
Sbjct .........................................................VTA    3
DSSP  .........................................................LEE


DSSP  LLLLLEelleeeeeeelllllllllllhhhlhhheeeeeeeelleehhhhhhhhhhllll
Query PRGVKVhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkkglpw  120
ident   |  |                                                      
Sbjct FLGERV......................................................    9
DSSP  ELLLLE......................................................


DSSP  hhhhhlllLEELLLLEEHhhlhhhlllllLLEEEEEEEL.....LEEEEEEEHHHllllh
Query tiskgfdtFXPISAIVSRekfssyksnlqDIFRVKCSVN.....GQLRQDGGTNLxlhpl  175
ident                                  |            |             
Sbjct ........TLTSYWRRVS.........lgPEIEVSWFKLgpgeeQVLIGRMHHDV.....   47
DSSP  ........EEEEELLLLL.........lhHHLEEEEEEElllllEEEEEEEELLE.....


DSSP  hhhhhhhlllllllllleeelllLLLL......................leeLLLLEEEE
Query hkilqhistxislepgdiiltgtPAGV......................gelKPGDRVHC  213
ident                                                            |
Sbjct .......................IFIEwpfrgffdihrsantfflvvtaaniSHDGNYLC   84
DSSP  .......................EEELhhhllleeeeeelleeeeeellllhHHLEEEEE


DSSP  EEEELLEEeEEEEEEEEELLLL......................................
Query ELLQNNDNiVDXNFECENRPGP......................................  235
ident          |                                                  
Sbjct RMKLGETE.VTKQEHLSVVKPLtlsvhsersqfpdfsvltvtctvnafphphvqwlmpgg  143
DSSP  EEEELLEE.EEEEEEEEEEEEEeeeeeeeelllllllleeeeeeeeeelleeeeeellll


DSSP  ........................................lllll
Query ........................................yefre  240
ident                                              
Sbjct vmkekdgslsvavdlslpkpwhlpvtcvgkndkeeahgvyvsgyl  188
DSSP  leellllleeeeeeeeellllllleeeeeeelleeeeeeeeelll


No 16: 1JMAA  MOLECULE: HERPESVIRUS ENTRY MEDIATOR;                                

DSSP  ..................lllhhhhllleeeellLLLLLllleeeelhhheellllllll
Query ..................synylkaarkiicigrNYAAHqpffflkptssivtplsspan   42
ident                                       |                     
Sbjct kyaladaslkmadpnrfrgkdlpvldqltdppgvRRVYH................iqagl   44
DSSP  llllllhhhhlllllllllllllllleellllllEEELL................lllll


DSSP  lllllllllllllLLEEEL.LLLLEelleeeeeeelllllllllllhhhlhhheeeeeee
Query stfnglnedgtnpGPIFIP.RGVKVhheielalivskhlsnvtkxkpeevydsisgvala  101
ident                         |                                   
Sbjct pdpfqppslpitvYYAVLErACRSV...................................   69
DSSP  llllllllllleeEEEEELlLLLEE...................................


DSSP  elleehhhhhhhhhhllllhhhhhlllLEELLLL..EEHHHLHH.HLLLLLlLEEEEEEE
Query ldltarnvqdeakkkglpwtiskgfdtFXPISAI..VSREKFSS.YKSNLQdIFRVKCSV  158
ident                                           |                 
Sbjct ...........................LLNAPSEapQIVRGASEdVRKQPY.NLTIAWFR  101
DSSP  ...........................EELLLLLhhHHHHLLLHhHHLLLE.EEEEEEEE


DSSP  L....LEEEEEEEHHhllllhhhhhhhhlllllllllleeelllLLLLLE..........
Query N....GQLRQDGGTNlxlhplhkilqhistxislepgdiiltgtPAGVGE..........  204
ident                                             |               
Sbjct MggncAIPITVMEYT.............ecsynkslgacpirtqPRWNYYdsfsavsedn  148
DSSP  EelleEEEEEEEEEE.............eelllllllllleeelLEELLLllleeellll


DSSP  .........elLLLEEEEEEEELLEEeEEEEEEEEELLLLLLLL................
Query .........lkPGDRVHCELLQNNDNiVDXNFECENRPGPYEFR................  239
ident                       |        |  | |                       
Sbjct lgflmhapafeTAGTYLRLVKINDWT.EITQFILEHRAKGSCKYalplrippsaclspqa  207
DSSP  lleeeelllhhHLEEEEEEEEELLEE.EEEEEEEEELLLLLLLLlllllllhhhlllhhh


DSSP  ...................................................l
Query ...................................................e  240
ident                                                     
Sbjct yqqgvtvdsigmlprfipenqrtvavyslkiagwhgpkapytstllppelse  259
DSSP  hhlllllllllleelllhhhhhhhhhhhhhlllllllllleelllllhhhhl