DaliLite: Structural Neighbours

Query: 3DO9A MOLECULE: UPF0302 PROTEIN BA_1542/GBAA1542/BAS1430;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2K19-A  2.4  3.5   64    98    6   PUTATIVE PISCICOLIN 126 IMMUNITY PROTEIN;                  "         
   2:  2IP6-A  2.2  3.0   60    87   13   PAPB;                                                      "         
   3:  2UZ8-A  2.1 12.3   68   164    3   EUKARYOTIC TRANSLATION ELONGATION FACTOR 1                 "         
   4:  2C3N-A  2.1  8.8   70   239   10   GLUTATHIONE S-TRANSFERASE THETA 1;                         "         
-

No 1: 2K19A  MOLECULE: PUTATIVE PISCICOLIN 126 IMMUNITY PROTEIN;                  

DSSP  ..........llLHHHHHHHHHHHHHHLL..lLLLHHHHHHHHHHHLL....LLLLLEEe
Query ..........pvSVNEKKDFVKWFLNNYQ..lKQRECVWILNYLMSHD....QLMHKVHf   44
ident               |         |               |                   
Sbjct mgklkwfsggkeRSNQAENIITDLLDDLKtdlDNESLKKVLENYLEELkqksASVPLIL.   59
DSSP  llllllllllllHHHHHHHHHHHHHHHHLlllLLLLLHHHHHHHHHHHhlllLLHHHHH.


DSSP  lllhhhllEEEEeelllllllleeeeellleELLHhhhhhhhhhhlllleeeeeELLLhh
Query vehakycpRGLVmsancvkdtpfhffkqnvmTTDAeksfhdirlnrdediyiqlNFKSsf  104
ident                                  |                          
Sbjct ....srmnLDIS................kaiRNDG.................vtLSDY..   80
DSSP  ....hhhhHHHH................hhhHHHL.................llLLHH..


DSSP  hlHHHHHHLL...LLLLllllllllllllllhhhhhhhhhhhhhhhhhhhhhhhhhhlll
Query qnANYVAVLE...ENPYlpkhievnekdrllaerfleesvfsfrrerllkqidealdkqd  161
ident                                                             
Sbjct qsKKLKELTSisnIRYG...........................................   97
DSSP  hhHHHHHHHHhllLLLL...........................................


DSSP  hhhhhhhhhhhhhhhhhl
Query keafhrltaelkmleghh  179
ident                   
Sbjct .................y   98
DSSP  .................l


No 2: 2IP6A  MOLECULE: PAPB;                                                      

DSSP  llLHHHHHHHHHHHHHHLL.....lLLLHHHHHHHHHHHLL..LLLL..LEEElllhhhl
Query pvSVNEKKDFVKWFLNNYQ.....lKQRECVWILNYLMSHD..QLMH..KVHFvehakyc   51
ident         |         |             ||    |                     
Sbjct ehIKQQALDLFTRLQFLLQkhdtiePYQYVLDILETGISKTkhNQQTpeRQAR....vvy   56
DSSP  llHHHHHHHHHHHHHHHHHhllllhHHHHHHHHHHHHHHHHhlLLLLhhHHHH....hhh


DSSP  leeEEEEllllLLLLeeeeellleellhhhhhhhhhhhlllleeeeeELLLHhhlhhHHH
Query prgLVMSancvKDTPfhffkqnvmttdaeksfhdirlnrdediyiqlNFKSSfqnanYVA  111
ident                                                 |          |
Sbjct nkiASQA....LVDK...............................lHFTAE.enkvLAA   80
DSSP  hhhHHHH....HHLL...............................lLLLHH.hhhhHHH


DSSP  HLLllllllllllllllllllhhhhhhhhhhhhhhhhhhhhhhhhhhlllhhhhhhhhhh
Query VLEenpylpkhievnekdrllaerfleesvfsfrrerllkqidealdkqdkeafhrltae  171
ident   |                                                         
Sbjct INE.........................................................   83
DSSP  HHH.........................................................


DSSP  hhhhhhhl
Query lkmleghh  179
ident         
Sbjct ....lahs   87
DSSP  ....hlll


No 3: 2UZ8A  MOLECULE: EUKARYOTIC TRANSLATION ELONGATION FACTOR 1                 

DSSP  lllhhhhhhhhhhhhhhllllLLHHHHHHHHHHHLllLLLLEeelllhhhlleeEEEEll
Query pvsvnekkdfvkwflnnyqlkQRECVWILNYLMSHdqLMHKVhfvehakycprgLVMSan   60
ident                                  |      |                   
Sbjct .....................XAAAAELSLLEKSL..GLSKG...........nKYSA..   24
DSSP  .....................LHHHHHHHHHHHHL..LLLLL...........lLLEE..


DSSP  llLLLLEEEEEL.LLEELLHHHHHHHHHHHLLlleeeeeelllhhhlhhhhhhlllllll
Query cvKDTPFHFFKQ.NVMTTDAEKSFHDIRLNRDediyiqlnfkssfqnanyvavleenpyl  119
ident                                                             
Sbjct qgERQIPVLQTNnGPSLXGLTTIAAHLVKQAN..............keyllgstaeekax   70
DSSP  elLLLEEEEELLlLLEEELHHHHHHHHHHHLL..............lhhhhlllhhhhhh


DSSP  lllllllllllllHHHHHHHHHHHH...................................
Query pkhievnekdrllAERFLEESVFSF...................................  144
ident                                                             
Sbjct vqqwleyrvtqvdNDIHTLLXDLNSyledkvyltgynftladillyyglhrfivdltvqe  130
DSSP  hhhhhhhhhhhllLHHHHHHHHHHHhhhhllllllllllhhhhhhhhhhhhhhllllhhh


DSSP  ......................hhhhhhhhHHHHhhlllhhhhhhhhhhhhhhhhhl
Query ......................rrerllkqIDEAldkqdkeafhrltaelkmleghh  179
ident                                                          
Sbjct kekylnvsrwfchiqhypgirqhlssvvfiKNRL.......................  164
DSSP  hhhlhhhhhhhhhhhhllllllllllllllLLLL.......................


No 4: 2C3NA  MOLECULE: GLUTATHIONE S-TRANSFERASE THETA 1;                         

DSSP  lllhhhhhhhhhhhhhhllLLLLHHHHHHHHHHHLLllllLEEElllhhhlleeeeeELL
Query pvsvnekkdfvkwflnnyqLKQRECVWILNYLMSHDqlmhKVHFvehakycprglvmSAN   60
ident                    |    |          |                        
Sbjct ............glelyldLLSQPCRAVYIFAKKND...iPFEL...........riVDL   34
DSSP  ............leeeeelLLLHHHHHHHHHHHHLL...lLLEE...........eeLLH


DSSP  LLLLL.............LEEEEELLLEELLHHHHHHHHHHHLL................
Query CVKDT.............PFHFFKQNVMTTDAEKSFHDIRLNRD................   91
ident                              |                              
Sbjct IKGQHlsdafaqvnplkkVPALKDGDFTLTESVAILLYLTRKYKvpdywypqdlqararv   94
DSSP  HHLHHhlhhhhhhlllllLLEEEELLEEEELHHHHHHHHHHHLLllhhhllllhhhhhhh


DSSP  ............lleeeeeelllHHHLhhhhhhllllllllllllllllllllhhhhhhH
Query ............ediyiqlnfksSFQNanyvavleenpylpkhievnekdrllaerfleE  139
ident                         |                                  |
Sbjct deylawqhttlrrsclralwhkvMFPV.............................flgE  125
DSSP  hhhhhhhhhlhhhhhhhhhhhhlHHHH.............................hllL


DSSP  HHHhHHHHHHH.................................................
Query SVFsFRRERLL.................................................  150
ident  |                                                          
Sbjct PVS.PQTLAATlaeldvtlqlledkflqnkafltgphisladlvaitelmhpvgagcqvf  184
DSSP  LLL.HHHHHHHhhhhhhhhhhhhhhllllllllllllllhhhhhhhhhhhhhhhllllll


DSSP  ..........................hhhhhhhhlllhhhhhhhhhhhhhhhhhl
Query ..........................kqidealdkqdkeafhrltaelkmleghh  179
ident                                                        
Sbjct egrpklatwrqrveaavgedlfqeahevilkakdfppadptikqklmpwvlamir  239
DSSP  lllhhhhhhhhhhhhhhlhhhhhhhlhhhhlhhhlllllhhhhhhhhhhhhhhhl