DaliLite: Structural Neighbours

Query: 3DO9B MOLECULE: UPF0302 PROTEIN BA_1542/GBAA1542/BAS1430;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2K19-A  2.6  3.4   65    98    6   PUTATIVE PISCICOLIN 126 IMMUNITY PROTEIN;                  "         
   2:  2IP6-A  2.5  3.2   61    87   10   PAPB;                                                      "         
   3:  2C3N-A  2.4  8.0   66   239    6   GLUTATHIONE S-TRANSFERASE THETA 1;                         "         
   4:  2OKU-A  2.1  3.7   66   122    8   ACYL-COA DEHYDROGENASE FAMILY PROTEIN;                     "         
   5:  1E6I-A  2.1  3.2   63   110    6   TRANSCRIPTIONAL ACTIVATOR GCN5;                            "         
-

No 1: 2K19A  MOLECULE: PUTATIVE PISCICOLIN 126 IMMUNITY PROTEIN;                  

DSSP  .........lllLHHHHHHHHHHHHHHLL..lLLLHHHHHHHHHHHLL....LLLLLEEe
Query .........tpvSVNEKKDFVKWFLNNYQ..lKQRECVWILNYLMSHD....QLMHKVHf   45
ident               |         |               |                   
Sbjct mgklkwfsggkeRSNQAENIITDLLDDLKtdlDNESLKKVLENYLEELkqksASVPLIL.   59
DSSP  llllllllllllHHHHHHHHHHHHHHHHLlllLLLLLHHHHHHHHHHHhlllLLHHHHH.


DSSP  lllhhhlllEEEEEllllLLLLeeeelllleellhhhhhhhhhhllllleeeeeeLLLLl
Query vehakycprGLVMSancvKDTPfhffkqnvmttdaeksfhdirlnrdediyiqlnFKSSf  105
ident                    |                                        
Sbjct .....srmnLDISK.airNDGV................................tLSDY.   80
DSSP  .....hhhhHHHHH.hhhHHLL................................lLLHH.


DSSP  llHHHHHHLL...LLLLlllllllllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhllhhh
Query qnANYVAVLE...ENPYlpkhnekdrllaerfleesvfsfrrerllkqidealdkqdkea  162
ident                                                             
Sbjct qsKKLKELTSisnIRYG...........................................   97
DSSP  hhHHHHHHHHhllLLLL...........................................


DSSP  hhhhhhhhhhhhlll
Query fhrltaelkmleghh  177
ident                
Sbjct ..............y   98
DSSP  ..............l


No 2: 2IP6A  MOLECULE: PAPB;                                                      

DSSP  lllLHHHHHHHHHHHHHHLL.....lLLLHHHHHHHHHHHLL..LLLL..LEEElllhhh
Query tpvSVNEKKDFVKWFLNNYQ.....lKQRECVWILNYLMSHD..QLMH..KVHFvehaky   51
ident          |         |             ||    |                    
Sbjct .ehIKQQALDLFTRLQFLLQkhdtiePYQYVLDILETGISKTkhNQQTpeRQAR....vv   55
DSSP  .llHHHHHHHHHHHHHHHHHhllllhHHHHHHHHHHHHHHHHhlLLLLhhHHHH....hh


DSSP  llleEEEEllllllLLEEeelllleellhhhhhhhhhhllllleeeeeeLLLL..lllhH
Query cprgLVMSancvkdTPFHffkqnvmttdaeksfhdirlnrdediyiqlnFKSS..fqnaN  109
ident                                                  |          
Sbjct ynkiASQA......LVDK.............................lhFTAEenkvlaA   80
DSSP  hhhhHHHH......HHLL.............................llLLHHhhhhhhH


DSSP  HHHHLLLllllllllllllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhllhhhhhhhhhh
Query YVAVLEEnpylpkhnekdrllaerfleesvfsfrrerllkqidealdkqdkeafhrltae  169
ident                                                             
Sbjct INELAHS.....................................................   87
DSSP  HHHHLLL.....................................................


DSSP  hhhhhlll
Query lkmleghh  177
ident         
Sbjct ........   87
DSSP  ........


No 3: 2C3NA  MOLECULE: GLUTATHIONE S-TRANSFERASE THETA 1;                         

DSSP  llllhhhhhhhhhhhhhhllLLLLHHHHHHHHHHHLLllllLEEElllhhhllleeeeEL
Query tpvsvnekkdfvkwflnnyqLKQRECVWILNYLMSHDqlmhKVHFvehakycprglvmSA   60
ident                     |    |          |                       
Sbjct .............glelyldLLSQPCRAVYIFAKKND...iPFEL...........riVD   33
DSSP  .............leeeeelLLLHHHHHHHHHHHHLL...lLLEE...........eeLL


DSSP  LLLLLL.............lEEEELLLLEELLHHHHHHHHHHLLLlleeeeeelllllll
Query NCVKDT.............pFHFFKQNVMTTDAEKSFHDIRLNRDediyiqlnfkssfqn  107
ident                               |                             
Sbjct LIKGQHlsdafaqvnplkkvPALKDGDFTLTESVAILLYLTRKYKvpdywypqdlqarar   93
DSSP  HHHLHHhlhhhhhhllllllLEEEELLEEEELHHHHHHHHHHHLLllhhhllllhhhhhh


DSSP  hhhhhhlllllllllllllllhhhhhhhhHHHHhhhHHHHHHHH................
Query anyvavleenpylpkhnekdrllaerfleESVFsfrRERLLKQI................  151
ident                                                             
Sbjct vdeylawqhttlrrsclralwhkvmfpvfLGEP...VSPQTLAAtlaeldvtlqlledkf  150
DSSP  hhhhhhhhhhlhhhhhhhhhhhhlhhhhhLLLL...LLHHHHHHhhhhhhhhhhhhhhhl


DSSP  ............................................................
Query ............................................................  151
ident                                                             
Sbjct lqnkafltgphisladlvaitelmhpvgagcqvfegrpklatwrqrveaavgedlfqeah  210
DSSP  lllllllllllllhhhhhhhhhhhhhhhlllllllllhhhhhhhhhhhhhhlhhhhhhhl


DSSP  ...hhhhhhllhhhhhhhhhhhhhhhlll
Query ...dealdkqdkeafhrltaelkmleghh  177
ident                              
Sbjct evilkakdfppadptikqklmpwvlamir  239
DSSP  hhhhlhhhlllllhhhhhhhhhhhhhhhl


No 4: 2OKUA  MOLECULE: ACYL-COA DEHYDROGENASE FAMILY PROTEIN;                     

DSSP  ....LLLLH..HHHHHHHH.HHHHhLLLL..LLHHHHHHHHHHHLLL.............
Query ....TPVSV..NEKKDFVK.WFLNnYQLK..QRECVWILNYLMSHDQ.............   38
ident                             |         |                     
Sbjct qvvaAIRHIttGTYIARIReEYQQ.TEVKpeLQPXKEALARXTDRAEaliafvteqkdqe   59
DSSP  lhhhHLHHHhhLHHHHHHHhLHHH.LLLLhhHHHHHHHHHHHHHHHHhhhhhhhllllhh


DSSP  ........llLLEEelllhhhllleeEEELllLLLLLEEEelllleellhhHHHHHHHHL
Query ........lmHKVHfvehakycprglVMSAncVKDTPFHFfkqnvmttdaeKSFHDIRLN   90
ident                              |    |                         
Sbjct lldfqarrlvEXTA.....havfghlLXLAanDDDSFRQS.........aeVYLRYGQAE  105
DSSP  hhhhhhhhhhHHHH.....hhhhhhhHHHHhhHLHHHHHH.........hhHHHHHHHHH


DSSP  .LLLLeeeeeelllllllhhhhhhlllllllllllllllhhhhhhhhhhhhhhhhhhhhh
Query .RDEDiyiqlnfkssfqnanyvavleenpylpkhnekdrllaerfleesvfsfrrerllk  149
ident     |                                                       
Sbjct qEKID.......................................................  110
DSSP  hHHHH.......................................................


DSSP  hhhhhhhhllhhhhhhhhhhhhhhhlll
Query qidealdkqdkeafhrltaelkmleghh  177
ident                             
Sbjct ................syvrafrpeelt  122
DSSP  ................hhhhhllhhhll


No 5: 1E6IA  MOLECULE: TRANSCRIPTIONAL ACTIVATOR GCN5;                            

DSSP  lllLHHHHHHHHHHHHHH.LLLLLLH..................HHHHHHHHHHLLlLLL
Query tpvSVNEKKDFVKWFLNN.YQLKQRE..................CVWILNYLMSHDqLMH   41
ident                 |                                           
Sbjct rgpHDAAIQNILTELQNHaAAWPFLQpvnkeevpdyydfikepmDLSTMEIKLESN.KYQ   59
DSSP  lllLHHHHHHHHHHHHHLlLLHHHLLlllllllllhhhhlllllLHHHHHHHHHLL.LLL


DSSP  LEEelllhhhllleEEEE..........llLLLLlleeeelllleellhhhhhhhhhhll
Query KVHfvehakycprgLVMS..........anCVKDtpfhffkqnvmttdaeksfhdirlnr   91
ident |                               |                           
Sbjct KME.....dfiydaRLVFnncrmyngentsYYKY..........................   88
DSSP  LHH.....hhhhhhHHHHhhhhhhlllllhHHHH..........................


DSSP  llleeeeeeLLLLllLHHHHHH..LLLLlllllllllllhhhhhhhhhhhhhhhhhhhhh
Query dediyiqlnFKSSfqNANYVAV..LEENpylpkhnekdrllaerfleesvfsfrrerllk  149
ident                |                                            
Sbjct ......anrLEKF.fNNKVKEIpeYSHL................................  109
DSSP  ......hhhHHHH.hHHHHHLLhhHHHH................................


DSSP  hhhhhhhhllhhhhhhhhhhhhhhhlll
Query qidealdkqdkeafhrltaelkmleghh  177
ident                             
Sbjct ...........................i  110
DSSP  ...........................l