DaliLite: Structural Neighbours

Query: 3DO9C MOLECULE: UPF0302 PROTEIN BA_1542/GBAA1542/BAS1430;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2K19-A  2.5  3.8   65    98    6   PUTATIVE PISCICOLIN 126 IMMUNITY PROTEIN;                  "         
   2:  2IP6-A  2.5  2.9   59    87   14   PAPB;                                                      "         
   3:  2C3N-A  2.4  8.2   66   239    6   GLUTATHIONE S-TRANSFERASE THETA 1;                         "         
   4:  2OKU-A  2.1  3.6   64   122    8   ACYL-COA DEHYDROGENASE FAMILY PROTEIN;                     "         
   5:  1E6I-A  2.1  3.2   63   110    6   TRANSCRIPTIONAL ACTIVATOR GCN5;                            "         
   6:  2D82-A  2.0  2.9   63   121   10   CREB-BINDING PROTEIN;                                      "         
-

No 1: 2K19A  MOLECULE: PUTATIVE PISCICOLIN 126 IMMUNITY PROTEIN;                  

DSSP  ..........llLHHHHHHHHHHHHHHLL..lLLLHHHHHHHHHHHLH....HHHLLEEe
Query ..........pvSVNEKKDFVKWFLNNYQ..lKQRECVWILNYLMSHD....QLMHKVHf   44
ident               |         |               |                   
Sbjct mgklkwfsggkeRSNQAENIITDLLDDLKtdlDNESLKKVLENYLEELkqksASVPLIL.   59
DSSP  llllllllllllHHHHHHHHHHHHHHHHLlllLLLLLHHHHHHHHHHHhlllLLHHHHH.


DSSP  lllhhhllLEEEeelllllllleeeelllleELLHHhhhhhhhhllllleeeeeELLLll
Query vehakycpRGLVmsancvkdtpfhffkqnvmTTDAEksfhdirlnrdediyiqlNFKSsf  104
ident                                  |                          
Sbjct ....srmnLDIS................kaiRNDGV.................tLSDY..   80
DSSP  ....hhhhHHHH................hhhHHHLL.................lLLHH..


DSSP  llHHHHHHLL...LLLLlllllhhhhhhhhhhhhhhhhhhhhhhhhhhhllllhhhhhhh
Query qnANYVAVLE...ENPYlpkhrllaerfleesvfsfrrerllkqidealdkqdkeafhrl  161
ident                                                             
Sbjct qsKKLKELTSisnIRYG...........................................   97
DSSP  hhHHHHHHHHhllLLLL...........................................


DSSP  hll
Query tae  164
ident    
Sbjct ..y   98
DSSP  ..l


No 2: 2IP6A  MOLECULE: PAPB;                                                      

DSSP  llLHHHHHHHHHHHHHHLL.....lLLLHHHHHHHHHHHLH..HHHL..LEEElllhhhl
Query pvSVNEKKDFVKWFLNNYQ.....lKQRECVWILNYLMSHD..QLMH..KVHFvehakyc   51
ident         |         |             ||    |                     
Sbjct ehIKQQALDLFTRLQFLLQkhdtiePYQYVLDILETGISKTkhNQQTpeRQAR....vvy   56
DSSP  llHHHHHHHHHHHHHHHHHhllllhHHHHHHHHHHHHHHHHhlLLLLhhHHHH....hhh


DSSP  lleEEEEllllllLLEEeelllleellhhhhhhhhhhllllleeeeeeLLLLlllhhHHH
Query prgLVMSancvkdTPFHffkqnvmttdaeksfhdirlnrdediyiqlnFKSSfqnanYVA  111
ident                                                 |          |
Sbjct nkiASQA......LVDK.............................lhFTAE.enkvLAA   80
DSSP  hhhHHHH......HHLL.............................llLLHH.hhhhHHH


DSSP  HLLlllllllllhhhhhhhhhhhhhhhhhhhhhhhhhhhllllhhhhhhhhll
Query VLEenpylpkhrllaerfleesvfsfrrerllkqidealdkqdkeafhrltae  164
ident   |                                                  
Sbjct INE..............................................lahs   87
DSSP  HHH..............................................hlll


No 3: 2C3NA  MOLECULE: GLUTATHIONE S-TRANSFERASE THETA 1;                         

DSSP  lllhhhhhhhhhhhhhhllLLLLHHHHHHHHHHHLHhhhlLEEElllhhhllleeeeELL
Query pvsvnekkdfvkwflnnyqLKQRECVWILNYLMSHDqlmhKVHFvehakycprglvmSAN   60
ident                    |    |          |                        
Sbjct ............glelyldLLSQPCRAVYIFAKKND...iPFEL...........riVDL   34
DSSP  ............leeeeelLLLHHHHHHHHHHHHLL...lLLEE...........eeLLH


DSSP  LLLLL.............lEEEELLLLEELLHHHHHHHHHHLLL...lleeeeeelllll
Query CVKDT.............pFHFFKQNVMTTDAEKSFHDIRLNRD...ediyiqlnfkssf  104
ident                              |                              
Sbjct IKGQHlsdafaqvnplkkvPALKDGDFTLTESVAILLYLTRKYKvpdywypqdlqararv   94
DSSP  HHLHHhlhhhhhhllllllLEEEELLEEEELHHHHHHHHHHHLLllhhhllllhhhhhhh


DSSP  llhhhhhhlllllllllllhhhhhhhhhHHHHhhHHHHHHHH..................
Query qnanyvavleenpylpkhrllaerfleeSVFSfrRERLLKQI..................  146
ident                                                             
Sbjct deylawqhttlrrsclralwhkvmfpvfLGEP..VSPQTLAAtlaeldvtlqlledkflq  152
DSSP  hhhhhhhhhlhhhhhhhhhhhhlhhhhhLLLL..LLHHHHHHhhhhhhhhhhhhhhhlll


DSSP  ............................................................
Query ............................................................  146
ident                                                             
Sbjct nkafltgphisladlvaitelmhpvgagcqvfegrpklatwrqrveaavgedlfqeahev  212
DSSP  lllllllllllhhhhhhhhhhhhhhhlllllllllhhhhhhhhhhhhhhlhhhhhhhlhh


DSSP  .........hhhhllllhhhhhhhhll
Query .........dealdkqdkeafhrltae  164
ident                            
Sbjct ilkakdfppadptikqklmpwvlamir  239
DSSP  hhlhhhlllllhhhhhhhhhhhhhhhl


No 4: 2OKUA  MOLECULE: ACYL-COA DEHYDROGENASE FAMILY PROTEIN;                     

DSSP  .....LLLH..HHHHHHHH.HHHHhLLLL..LLHHHHHHHHHHHLHH.............
Query .....PVSV..NEKKDFVK.WFLNnYQLK..QRECVWILNYLMSHDQ.............   37
ident                             |         |                     
Sbjct qvvaaIRHIttGTYIARIReEYQQ.TEVKpeLQPXKEALARXTDRAEaliafvteqkdqe   59
DSSP  lhhhhLHHHhhLHHHHHHHhLHHH.LLLLhhHHHHHHHHHHHHHHHHhhhhhhhllllhh


DSSP  ........hhLLEEelllhhhllleeEEEL.LLLLLLLeeeelllleellhhHHHHHHHH
Query ........lmHKVHfvehakycprglVMSA.NCVKDTPfhffkqnvmttdaeKSFHDIRL   88
ident                              | |                            
Sbjct lldfqarrlvEXTA.....havfghlLXLAaNDDDSFR..........qsaeVYLRYGQA  104
DSSP  hhhhhhhhhhHHHH.....hhhhhhhHHHHhHHLHHHH..........hhhhHHHHHHHH


DSSP  L.LLLLeeeeeelllllllhhhhhhlllllllllllhhhhhhhhhhhhhhhhhhhhhhhh
Query N.RDEDiyiqlnfkssfqnanyvavleenpylpkhrllaerfleesvfsfrrerllkqid  147
ident      |                                                      
Sbjct EqEKID......................................................  110
DSSP  HhHHHH......................................................


DSSP  hhhllllhhhhhhhhll
Query ealdkqdkeafhrltae  164
ident                  
Sbjct .....syvrafrpeelt  122
DSSP  .....hhhhhllhhhll


No 5: 1E6IA  MOLECULE: TRANSCRIPTIONAL ACTIVATOR GCN5;                            

DSSP  .llLHHHHHHHHHHHHHH.LLLLLLH..................HHHHHHHHHHLHhHHL
Query .pvSVNEKKDFVKWFLNN.YQLKQRE..................CVWILNYLMSHDqLMH   40
ident                 |                                           
Sbjct rgpHDAAIQNILTELQNHaAAWPFLQpvnkeevpdyydfikepmDLSTMEIKLESN.KYQ   59
DSSP  lllLHHHHHHHHHHHHHLlLLHHHLLlllllllllhhhhlllllLHHHHHHHHHLL.LLL


DSSP  LEEelllhhhllleEEEE..........llLLLLlleeeelllleellhhhhhhhhhhll
Query KVHfvehakycprgLVMS..........anCVKDtpfhffkqnvmttdaeksfhdirlnr   90
ident |                               |                           
Sbjct KME.....dfiydaRLVFnncrmyngentsYYKY..........................   88
DSSP  LHH.....hhhhhhHHHHhhhhhhlllllhHHHH..........................


DSSP  llleeeeeeLLLLllLHHHHHH..LLLLlllllllhhhhhhhhhhhhhhhhhhhhhhhhh
Query dediyiqlnFKSSfqNANYVAV..LEENpylpkhrllaerfleesvfsfrrerllkqide  148
ident                |                                            
Sbjct ......anrLEKF.fNNKVKEIpeYSHL................................  109
DSSP  ......hhhHHHH.hHHHHHLLhhHHHH................................


DSSP  hhllllhhhhhhhhll
Query aldkqdkeafhrltae  164
ident                 
Sbjct ...............i  110
DSSP  ...............l


No 6: 2D82A  MOLECULE: CREB-BINDING PROTEIN;                                      

DSSP  ......LLLH.HHHHHHHHHHHHHLL.....LLLL.....................hHHH
Query ......PVSV.NEKKDFVKWFLNNYQ.....LKQR.....................eCVW   27
ident             |        |                                      
Sbjct gshmrkKIFKpEELRQALMPTLEALYrqdpeSLPFrqpvdpqllgipdyfdivknpmDLS   60
DSSP  llllllLLLLhHHHHHHHHHHHHHHHlllllLLLLlllllhhhhlllllllllllllLHH


DSSP  HHHHHHHLHHHhlLEEElllhhhllleEEEE..............lLLLLllleeeelll
Query ILNYLMSHDQLmhKVHFvehakycprgLVMS..............aNCVKdtpfhffkqn   73
ident          |                   |                 | |          
Sbjct TIKRKLDTGQY..QEPW....qyvddvWLMFnnawlynrktsrvykFCSK..........  104
DSSP  HHHHHHHHLLL..LLHH....hhhhhhHHHHhhhhhhlllllhhhhHHHH..........


DSSP  leellhhhhhhhhhhllllleeeeeELLLLL.lLHHHHHHLllllllllllhhhhhhhhh
Query vmttdaeksfhdirlnrdediyiqlNFKSSF.qNANYVAVLeenpylpkhrllaerflee  132
ident                                                             
Sbjct ........................lAEVFEQeiDPVMQSLG...................  121
DSSP  ........................hHHHHHHhhHHHHHHHL...................


DSSP  hhhhhhhhhhhhhhhhhhllllhhhhhhhhll
Query svfsfrrerllkqidealdkqdkeafhrltae  164
ident                                 
Sbjct ................................  121
DSSP  ................................